CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003334.1-P	Field mustard	nucleus	95.74	97.83
AT1G56170.2	Thale cress	nucleus	74.47	70.35
VIT_19s0085g00520.t01	Wine grape	cytosol	71.28	49.81
KRH13746	Soybean	nucleus	69.15	48.51
CDX93525	Canola	nucleus	56.38	48.18
KRH43702	Soybean	nucleus	69.15	47.97
TraesCS6D01G147300.1	Wheat	nucleus	64.89	47.66
TraesCS6A01G157900.1	Wheat	nucleus	64.89	47.66
CDY06341	Canola	nucleus	56.91	46.93
HORVU6Hr1G032200.1	Barley	nucleus	64.89	46.92
KXG24590	Sorghum	nucleus	62.77	46.64
CDY31119	Canola	nucleus	47.34	46.6
Os02t0170500-01	Rice	nucleus	63.83	46.33
CDY08084	Canola	nucleus	54.26	46.15
Os06t0667100-01	Rice	cytosol, nucleus, plastid	61.17	46.0
CDY05857	Canola	nucleus	53.72	45.7
Zm00001d046967_P001	Maize	nucleus	60.11	45.56
Zm00001d024230_P001	Maize	nucleus, plastid	60.64	45.42
TraesCS7D01G463100.1	Wheat	nucleus	60.64	44.36
EER88787	Sorghum	nucleus	60.11	44.31
TraesCS7B01G377500.1	Wheat	nucleus	59.57	43.75
Zm00001d036648_P001	Maize	extracellular	56.91	43.67
GSMUA_Achr11P...	Banana	cytosol	57.98	42.91
TraesCS7A01G475400.1	Wheat	nucleus	57.98	42.41
TraesCS6B01G185700.1	Wheat	cytosol	64.89	41.92
HORVU7Hr1G108370.1	Barley	nucleus	56.38	40.77
CDY22654	Canola	cytosol	54.79	40.55
TraesCS7D01G462100.1	Wheat	nucleus	41.49	39.59
CDY48146	Canola	plastid	52.13	37.12
CDY66668	Canola	plastid	53.19	36.63
CDX84419	Canola	plastid	54.79	36.4
CDY32142	Canola	mitochondrion, nucleus	56.91	36.15
TraesCS7B01G376500.1	Wheat	nucleus	43.62	35.96
TraesCS7A01G474800.1	Wheat	nucleus	44.15	35.47
KXG24666	Sorghum	nucleus	42.02	35.27
TraesCS3D01G102500.1	Wheat	nucleus	43.62	35.19
TraesCS7D01G462200.1	Wheat	nucleus	48.4	34.73
TraesCS7B01G377000.1	Wheat	nucleus	42.02	33.91
CDX95019	Canola	cytosol, mitochondrion, nucleus	57.98	33.33
TraesCS7B01G377200.1	Wheat	nucleus	43.62	33.06
Os08t0206500-00	Rice	nucleus	43.62	29.08

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	GO:A0A078BU61	InterPro:CBFA_NFYB_domain	EnsemblPlants:CDX67737	ProteinID:CDX67737
ProteinID:CDX67737.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045893	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00098924001	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF71	SUPFAM:SSF47113	UniParc:UPI0004EDFD0B

Description

BnaA07g17770DNuclear transcription factor Y subunit C-2 [Source:Projected from Arabidopsis thaliana (AT1G56170) UniProtKB/Swiss-Prot;Acc:Q8LCG7]

Coordinates

chrLK031787:+:2035118..2036147

Molecular Weight (calculated)

21730.9 Da

IEP (calculated)

5.266

GRAVY (calculated)

-0.519

Length

188 amino acids

Sequence
(BLAST)

001: MEHSEESQPQ QGVMDYVPPR AYQSGMPSSM AFHHQQLQLF WATQMQEIEQ TTDFKNHTLP LARIKKIMKA DEDVRMISAE APVIFAKACE MFILELTLRS
101: WIHTEENKRR TLQKNDIAAA ISRTDVFDFL VDIIPKDDLK EVGLGVTKLT MPTVVDSSTY YYLQQQQGVM PWAQGNLEQH HDDQYPSK

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.