Factsheet for TraesCS7B01G377200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G462200.1	Wheat	nucleus	91.13	86.26
TraesCS7B01G376500.1	Wheat	nucleus	56.85	61.84
TraesCS7B01G377000.1	Wheat	nucleus	54.84	58.37
TraesCS7B01G377500.1	Wheat	nucleus	56.45	54.69
Zm00001d046967_P001	Maize	nucleus	52.02	52.02
Zm00001d036648_P001	Maize	extracellular	51.21	51.84
EER88787	Sorghum	nucleus	53.23	51.76
Os06t0667100-01	Rice	cytosol, nucleus, plastid	51.61	51.2
Bra003334.1-P	Field mustard	nucleus	34.27	46.2
TraesCS6B01G185700.1	Wheat	cytosol	52.02	44.33
AT1G56170.2	Thale cress	nucleus	35.08	43.72
CDX67737	Canola	nucleus	33.06	43.62
TraesCS7B01G135000.1	Wheat	nucleus	34.27	42.71
GSMUA_Achr11P...	Banana	cytosol	43.55	42.52
VIT_19s0085g00520.t01	Wine grape	cytosol	44.76	41.26
KRH43702	Soybean	nucleus	44.76	40.96
KRH13746	Soybean	nucleus	43.95	40.67
TraesCS5B01G255900.1	Wheat	nucleus	33.06	40.39
TraesCS4B01G223000.1	Wheat	nucleus	36.69	37.6
GSMUA_Achr5P26790_001	Banana	cytosol	33.47	37.05
TraesCS1B01G366800.1	Wheat	mitochondrion	18.55	33.33
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	33.47	32.17
GSMUA_Achr11P...	Banana	cytosol	39.52	31.92
TraesCS1B01G365500.1	Wheat	mitochondrion	17.34	30.5
TraesCS7B01G248300.1	Wheat	cytosol	19.35	11.65

Protein Annotations

EnsemblPlants:TraesCS7B01G377200.1	EnsemblPlantsGene:TraesCS7B01G377200	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	ncoils:Coil	PANTHER:PTHR10252
PANTHER:PTHR10252:SF74	PFAM:PF00808	SEG:seg	SUPFAM:SSF47113	MapMan:15.5.51.3	:

Description

No Description!

Coordinates

chr7B:-:642076257..642077003

Molecular Weight (calculated)

27475.7 Da

IEP (calculated)

6.031

GRAVY (calculated)

-0.615

Length

248 amino acids

Sequence
(BLAST)

001: MGDVGGSQVY PASAYPPGAT VAAAPGITPA GSQPTPPFPA NPGQLSAENQ LMYEQSQQYQ QQLQQLHQRR LQQFWAEQRS EIEQATDIKK HPVQLKRIRK
101: IMKADEGVHM ISAEAPVVFA KACEMLTLEM TMRSWMVTEE NKRRIMKKSD VADAVARTDI YDFLADIICM DETEEEGVGL RRAWPPPPLG APAGAYPHYR
201: PPQLQVPGAA MVHGGQQVPQ GHLPHVWIDL QEQGQKGHHA EDQQSESG

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.