Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 73.66 | 63.95 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 36.61 | 60.29 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 34.82 | 53.42 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 36.61 | 51.57 |
| GSMUA_Achr11P... | Banana | cytosol | 55.36 | 48.82 |
| Os06t0667100-01 | Rice | cytosol, nucleus, plastid | 52.68 | 47.2 |
| Os02t0170500-01 | Rice | nucleus | 51.34 | 44.4 |
| KXG24590 | Sorghum | nucleus | 50.0 | 44.27 |
| TraesCS6D01G147300.1 | Wheat | nucleus | 50.45 | 44.14 |
| TraesCS6A01G157900.1 | Wheat | nucleus | 50.0 | 43.75 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 37.95 | 43.59 |
| EER88787 | Sorghum | nucleus | 49.55 | 43.53 |
| HORVU6Hr1G032200.1 | Barley | nucleus | 50.45 | 43.46 |
| Zm00001d046967_P001 | Maize | nucleus | 46.43 | 41.94 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 46.88 | 41.83 |
| TraesCS7D01G463100.1 | Wheat | nucleus | 47.77 | 41.63 |
| Zm00001d036648_P001 | Maize | extracellular | 45.54 | 41.63 |
| TraesCS7A01G475400.1 | Wheat | nucleus | 46.88 | 40.86 |
| TraesCS7B01G377500.1 | Wheat | nucleus | 45.09 | 39.45 |
| GSMUA_Achr10P... | Banana | nucleus | 33.93 | 39.18 |
| HORVU7Hr1G108370.1 | Barley | nucleus | 45.09 | 38.85 |
| TraesCS6B01G185700.1 | Wheat | cytosol | 50.45 | 38.83 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 32.59 | 38.42 |
| GSMUA_Achr11P... | Banana | cytosol | 52.23 | 38.11 |
| TraesCS7D01G462100.1 | Wheat | nucleus | 31.25 | 35.53 |
| TraesCS7D01G462200.1 | Wheat | nucleus | 41.07 | 35.11 |
| TraesCS7B01G376500.1 | Wheat | nucleus | 34.82 | 34.21 |
| TraesCS3D01G102500.1 | Wheat | nucleus | 34.82 | 33.48 |
| TraesCS7B01G377200.1 | Wheat | nucleus | 37.05 | 33.47 |
| TraesCS7A01G474800.1 | Wheat | nucleus | 34.38 | 32.91 |
| GSMUA_Achr3P00060_001 | Banana | mitochondrion, plastid | 15.18 | 32.38 |
| TraesCS7B01G377000.1 | Wheat | nucleus | 33.48 | 32.19 |
| KXG24666 | Sorghum | nucleus | 30.36 | 30.36 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 15.62 | 27.78 |
| Os08t0206500-00 | Rice | nucleus | 31.25 | 24.82 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 41.52 | 13.64 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P26790_001 | EnsemblPlants:GSMUA_Achr5T26790_001 | EnsemblPlantsGene:GSMUA_Achr5G26790_001 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF74 |
| SEG:seg | SUPFAM:SSF47113 | UniParc:UPI000295C154 | UniProt:M0T204 | MapMan:35.1 | : |
Description
Putative Nuclear transcription factor Y subunit C-9 [Source:GMGC_GENE;Acc:GSMUA_Achr5G26790_001]
Coordinates
chr5:-:27492638..27493631
Molecular Weight (calculated)
24215.7 Da
IEP (calculated)
4.964
GRAVY (calculated)
-0.254
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQSTQPEIG VVSGAAQIAY AAPTYQPTAV ISGAPAVAGV IPSPMQLTSA YSINPASIVS QHQLAYQQVQ QLHHQQLQQL QAFWANQMLE IEQITDFKNH
101: SLPLARIKKI MKADEDRRTL QKNDIGGAIT RTDIFDFLVD IVPRDELKDE GLGITRAAVG APGGDAIPYY YVPAAQVPGP GMVMGKPGDQ AAAGTVYAVE
201: QPHSVAYLWQ PPHAQQHEQV PDGE
101: SLPLARIKKI MKADEDRRTL QKNDIGGAIT RTDIFDFLVD IVPRDELKDE GLGITRAAVG APGGDAIPYY YVPAAQVPGP GMVMGKPGDQ AAAGTVYAVE
201: QPHSVAYLWQ PPHAQQHEQV PDGE
001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
Arabidopsis Description
NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.