Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P03920_001 | Banana | nucleus | 80.14 | 86.03 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 76.03 | 69.81 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 78.77 | 58.97 |
| Os09t0480700-01 | Rice | nucleus | 50.0 | 43.45 |
| Zm00001d020874_P001 | Maize | extracellular | 52.74 | 38.5 |
| EER96945 | Sorghum | nucleus | 52.74 | 38.12 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 50.68 | 37.19 |
| TraesCS7B01G135000.1 | Wheat | nucleus | 50.68 | 37.19 |
| TraesCS7A01G239500.1 | Wheat | nucleus | 50.68 | 37.19 |
| TraesCS5D01G265000.1 | Wheat | nucleus | 50.68 | 36.45 |
| TraesCS5A01G256500.1 | Wheat | nucleus | 50.68 | 36.45 |
| TraesCS5B01G255900.1 | Wheat | nucleus | 50.0 | 35.96 |
| EES15444 | Sorghum | nucleus | 48.63 | 35.32 |
| Os08t0496500-01 | Rice | nucleus | 49.32 | 35.12 |
| GSMUA_Achr5P26790_001 | Banana | cytosol | 53.42 | 34.82 |
| Zm00001d031310_P001 | Maize | nucleus | 46.58 | 34.0 |
| Zm00001d052838_P001 | Maize | nucleus | 45.21 | 32.67 |
| GSMUA_Achr6P16620_001 | Banana | cytosol | 42.47 | 32.63 |
| GSMUA_Achr10P... | Banana | nucleus | 43.15 | 32.47 |
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 55.48 | 31.4 |
| AT1G54830.3 | Thale cress | nucleus | 46.58 | 31.34 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 56.16 | 31.3 |
| Solyc01g079870.2.1 | Tomato | nucleus | 54.79 | 31.01 |
| PGSC0003DMT400023211 | Potato | nucleus | 54.11 | 30.86 |
| KRH68581 | Soybean | cytoskeleton, cytosol, nucleus, plastid | 50.0 | 30.8 |
| Bra030749.1-P | Field mustard | nucleus | 45.89 | 30.73 |
| PGSC0003DMT400008660 | Potato | nucleus | 52.74 | 30.56 |
| Bra018589.1-P | Field mustard | nucleus | 45.89 | 30.45 |
| CDX93525 | Canola | nucleus | 45.89 | 30.45 |
| KRH33966 | Soybean | nucleus | 53.42 | 29.55 |
| GSMUA_Achr3P00060_001 | Banana | mitochondrion, plastid | 21.23 | 29.52 |
| Bra031651.1-P | Field mustard | nucleus | 45.89 | 29.39 |
| CDY06341 | Canola | nucleus | 45.89 | 29.39 |
| AT1G08970.4 | Thale cress | nucleus | 45.89 | 29.0 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 52.05 | 28.9 |
| KRG96853 | Soybean | nucleus | 50.68 | 28.68 |
| HORVU7Hr1G048760.3 | Barley | plastid | 50.68 | 28.46 |
| KRG92828 | Soybean | nucleus | 50.68 | 28.14 |
| GSMUA_Achr11P... | Banana | cytosol | 48.63 | 27.95 |
| KRH43409 | Soybean | nucleus | 39.04 | 27.8 |
| CDY22654 | Canola | cytosol | 45.21 | 25.98 |
| CDY31119 | Canola | nucleus | 32.19 | 24.61 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus | 20.55 | 23.81 |
| GSMUA_Achr11P... | Banana | cytosol | 50.0 | 23.78 |
| CDY32142 | Canola | mitochondrion, nucleus | 45.89 | 22.64 |
| KRH20891 | Soybean | nucleus | 37.67 | 22.63 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 40.41 | 21.15 |
| KRH20896 | Soybean | nucleus | 27.4 | 20.83 |
| KRH20893 | Soybean | nucleus | 37.67 | 20.6 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 45.89 | 20.49 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 48.63 | 10.41 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P13170_001 | EnsemblPlants:GSMUA_Achr4T13170_001 | EnsemblPlantsGene:GSMUA_Achr4G13170_001 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF71 |
| SEG:seg | SUPFAM:SSF47113 | TMHMM:TMhelix | UniParc:UPI000294B13D | UniProt:M0SNI2 | MapMan:35.1 |
Description
Transcription factor [Source:GMGC_GENE;Acc:GSMUA_Achr4G13170_001]
Coordinates
chr4:+:9808959..9809912
Molecular Weight (calculated)
16948.2 Da
IEP (calculated)
4.720
GRAVY (calculated)
-0.425
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQQPGHPVP PMIGVPPGVP YQAYQNLYHQ QQQQQLQMFW ADQYREIEQT TDFRNHSLPL ARIKKIMKAD EDRRTLQKND IAAAISRTDV FDFLIDIVPR
101: EEGKEDVAHA LGGPPVDPLS YYYEFEIPFG MYVLAGYFFL LNLQIC
101: EEGKEDVAHA LGGPPVDPLS YYYEFEIPFG MYVLAGYFFL LNLQIC
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.