CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031651.1-P	Field mustard	nucleus	79.53	88.6
CDY06341	Canola	nucleus	79.53	88.6
CDX93525	Canola	nucleus	75.59	87.27
AT1G08970.4	Thale cress	nucleus	76.77	84.42
CDY31119	Canola	nucleus	58.66	78.01
CDY32142	Canola	mitochondrion, nucleus	68.9	59.12
CDX95019	Canola	cytosol, mitochondrion, nucleus	75.59	58.72
VIT_14s0128g00250.t01	Wine grape	nucleus	59.84	57.79
VIT_05s0020g02790.t01	Wine grape	nucleus	59.06	57.25
Os09t0480700-01	Rice	nucleus	37.01	55.95
PGSC0003DMT400023211	Potato	nucleus	56.3	55.86
Solyc01g079870.2.1	Tomato	nucleus	56.69	55.81
PGSC0003DMT400008660	Potato	nucleus	55.12	55.56
CDX67737	Canola	nucleus	40.55	54.79
TraesCS7A01G239500.1	Wheat	nucleus	40.55	51.76
TraesCS7D01G237100.1	Wheat	nucleus	40.55	51.76
TraesCS7B01G135000.1	Wheat	nucleus	40.16	51.26
TraesCS5B01G255900.1	Wheat	nucleus	40.94	51.23
TraesCS5A01G256500.1	Wheat	nucleus	40.94	51.23
Zm00001d020874_P001	Maize	extracellular	40.16	51.0
EER96945	Sorghum	nucleus	40.55	50.99
TraesCS5D01G265000.1	Wheat	nucleus	40.55	50.74
GSMUA_Achr4P03920_001	Banana	nucleus	27.17	50.74
Zm00001d052838_P001	Maize	nucleus	39.37	49.51
CDY08084	Canola	nucleus	42.91	49.32
CDY05857	Canola	nucleus	42.91	49.32
EES15444	Sorghum	nucleus	38.98	49.25
Zm00001d031310_P001	Maize	nucleus	38.58	49.0
Os08t0496500-01	Rice	nucleus	38.98	48.29
GSMUA_Achr4P13170_001	Banana	nucleus	25.98	45.21
GSMUA_Achr3P11990_001	Banana	nucleus	27.56	44.03
CDY48146	Canola	plastid	42.91	41.29
CDY66668	Canola	plastid	43.31	40.29
CDX84419	Canola	plastid	44.88	40.28
HORVU7Hr1G048760.3	Barley	plastid	40.55	39.62
GSMUA_Achr1P19420_001	Banana	nucleus	29.53	38.46
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	31.89	29.03
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	46.46	17.3

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	GO:A0A078GBD3	UniProt:A0A078GBD3	InterPro:CBFA_NFYB_domain	EnsemblPlants:CDY22654
ProteinID:CDY22654	ProteinID:CDY22654.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00019324001	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF75	SUPFAM:SSF47113	UniParc:UPI0004EEA591
SEG:seg	:	:	:	:	:

Description

BnaC08g42880DBnaC08g42880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBD3]

Coordinates

chrLK032134:-:310257..311795

Molecular Weight (calculated)

28663.2 Da

IEP (calculated)

5.970

GRAVY (calculated)

-0.477

Length

254 amino acids

Sequence
(BLAST)

001: MDQQEHAQSG AMNYGSNPYQ TNPMTTTSAG PAAPPGQLGF HQIHQQQQQQ QLAQQLQVFW ENQFKEIEKT TDFKNHSLPL ARIKKIMKAD EDVRMISAEA
101: PVVFARACEM FILELTLRSW NHTEENKRRT LQKNDIAAAV TRTDIFDFLV DIVPREDLRD EVLGSIPRGT VPEAAAAGYP YGYLPAGTAP IGNPGMVMGN
201: PGGELALSEK LVLELRKEET FSEENEKEHI RRISNQCGRR ILKCFVLCLF NPFF

Best Arabidopsis Sequence Match ( AT1G08970.3 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.