CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018589.1-P	Field mustard	nucleus	98.64	98.64
CDY06341	Canola	nucleus	91.36	88.16
AT1G54830.3	Thale cress	nucleus	84.55	85.71
CDY31119	Canola	nucleus	72.73	83.77
CDY22654	Canola	cytosol	87.27	75.59
CDX95019	Canola	cytosol, mitochondrion, nucleus	95.0	63.91
CDY32142	Canola	mitochondrion, nucleus	83.18	61.82
VIT_14s0128g00250.t01	Wine grape	nucleus	71.36	59.7
VIT_05s0020g02790.t01	Wine grape	nucleus	70.91	59.54
PGSC0003DMT400023211	Potato	nucleus	66.82	57.42
Solyc01g079870.2.1	Tomato	nucleus	67.27	57.36
PGSC0003DMT400008660	Potato	nucleus	65.0	56.75
CDX67737	Canola	nucleus	48.18	56.38
Os09t0480700-01	Rice	nucleus	42.73	55.95
TraesCS7D01G237100.1	Wheat	nucleus	47.27	52.26
TraesCS7A01G239500.1	Wheat	nucleus	47.27	52.26
TraesCS7B01G135000.1	Wheat	nucleus	46.82	51.76
TraesCS5B01G255900.1	Wheat	nucleus	46.82	50.74
TraesCS5A01G256500.1	Wheat	nucleus	46.82	50.74
GSMUA_Achr4P03920_001	Banana	nucleus	31.36	50.74
Zm00001d020874_P001	Maize	extracellular	45.91	50.5
EER96945	Sorghum	nucleus	46.36	50.49
TraesCS5D01G265000.1	Wheat	nucleus	46.36	50.25
CDY08084	Canola	nucleus	50.45	50.23
CDY05857	Canola	nucleus	50.45	50.23
Zm00001d052838_P001	Maize	nucleus	45.45	49.51
EES15444	Sorghum	nucleus	44.55	48.76
Zm00001d031310_P001	Maize	nucleus	44.09	48.5
Os08t0496500-01	Rice	nucleus	44.55	47.8
GSMUA_Achr4P13170_001	Banana	nucleus	30.45	45.89
GSMUA_Achr3P11990_001	Banana	nucleus	32.27	44.65
CDX84419	Canola	plastid	53.18	41.34
CDY66668	Canola	plastid	50.91	41.03
CDY48146	Canola	plastid	48.18	40.15
HORVU7Hr1G048760.3	Barley	plastid	47.27	40.0
GSMUA_Achr1P19420_001	Banana	nucleus	34.55	38.97
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	38.18	30.11
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	51.36	16.57

Protein Annotations

EnsemblPlants:CDX93525	EnsemblPlantsGene:GSBRNA2T00156196001	Gene3D:1.10.20.10	GO:A0A078DW38	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046982	InterPro:CBFA_NFYB_domain	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR10252
PANTHER:PTHR10252:SF75	PFAM:PF00808	ProteinID:CDX93525	ProteinID:CDX93525.1	SEG:seg	SUPFAM:SSF47113
UniParc:UPI0004EDE2CA	MapMan:15.5.51.3	:	:	:	:

Description

BnaA06g05230D

Coordinates

chrLK031876:-:564756..566387

Molecular Weight (calculated)

24498.0 Da

IEP (calculated)

5.057

GRAVY (calculated)

-0.535

Length

220 amino acids

Sequence
(BLAST)

001: MDQQEHGQSG AMNYATNPYQ TNPMTTTVAG SAGPAAPQGQ LAFHQIHQQQ QQQQLTQQLQ VFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGRGT VPEAAAAAGY PYGYLPPGTG PIGNPGMVMG
201: NPGGAYPPNP YMEFMSSQVE

Best Arabidopsis Sequence Match ( AT1G08970.3 )
(BLAST)

001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N

Arabidopsis Description

NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.