CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020874_P001	Maize	extracellular	95.54	96.5
TraesCS5A01G256500.1	Wheat	nucleus	92.08	91.63
TraesCS5D01G265000.1	Wheat	nucleus	91.58	91.13
TraesCS5B01G255900.1	Wheat	nucleus	91.58	91.13
Os09t0480700-01	Rice	nucleus	73.76	88.69
EES15444	Sorghum	nucleus	80.2	80.6
GSMUA_Achr4P03920_001	Banana	nucleus	40.59	60.29
GSMUA_Achr4P13170_001	Banana	nucleus	38.12	52.74
GSMUA_Achr3P11990_001	Banana	nucleus	39.6	50.31
KRH68581	Soybean	cytoskeleton, cytosol, nucleus, plastid	55.94	47.68
EER88787	Sorghum	nucleus	59.9	47.45
CDX93525	Canola	nucleus	50.49	46.36
Bra018589.1-P	Field mustard	nucleus	50.0	45.91
KXG24590	Sorghum	nucleus	57.43	45.85
AT1G54830.3	Thale cress	nucleus	49.01	45.62
Bra030749.1-P	Field mustard	nucleus	49.01	45.41
PGSC0003DMT400023211	Potato	nucleus	56.93	44.92
CDY06341	Canola	nucleus	50.49	44.74
Bra031651.1-P	Field mustard	nucleus	50.49	44.74
Solyc01g079870.2.1	Tomato	nucleus	56.93	44.57
AT1G08970.4	Thale cress	nucleus	50.49	44.16
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	60.89	44.09
PGSC0003DMT400008660	Potato	nucleus	54.95	44.05
KRG96853	Soybean	nucleus	55.94	43.8
VIT_05s0020g02790.t01	Wine grape	nucleus	55.94	43.13
KXG39763	Sorghum	nucleus	51.49	42.11
CDY31119	Canola	nucleus	39.6	41.88
VIT_14s0128g00250.t01	Wine grape	nucleus	53.96	41.44
GSMUA_Achr1P19420_001	Banana	nucleus	39.6	41.03
KRG92828	Soybean	nucleus	52.97	40.68
EES13127	Sorghum	mitochondrion	25.74	40.62
CDY22654	Canola	cytosol	50.99	40.55
KRH33966	Soybean	nucleus	52.97	40.53
KRH43409	Soybean	nucleus	40.59	40.0
KRH20896	Soybean	nucleus	35.15	36.98
KXG24666	Sorghum	nucleus	40.59	36.61
CDY32142	Canola	mitochondrion, nucleus	49.01	33.45
KRH20891	Soybean	nucleus	39.11	32.51
CDX95019	Canola	cytosol, mitochondrion, nucleus	50.0	30.89
KRH20893	Soybean	nucleus	39.11	29.59
OQU83181	Sorghum	nucleus	19.8	23.39
EES15819	Sorghum	nucleus	23.27	11.6
EES14613	Sorghum	nucleus	22.77	9.98
EES16679	Sorghum	nucleus	20.79	9.05

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	EntrezGene:8055845	UniProt:C5X3S1	InterPro:CBFA_NFYB_domain	EnsemblPlants:EER96945
ProteinID:EER96945	ProteinID:EER96945.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF76	EnsemblPlantsGene:SORBI_3002G241500	SUPFAM:SSF47113	unigene:Sbi.12447
UniParc:UPI0001A83727	RefSeq:XP_002460424.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:63112994..63114213

Molecular Weight (calculated)

21422.4 Da

IEP (calculated)

5.262

GRAVY (calculated)

-0.142

Length

202 amino acids

Sequence
(BLAST)

001: MDPSKSSTPP PPPVMGAPVA YPPAAYPPGA AAGAAAYAPQ LYAPPAAAAA QQAAAAQQQQ LQMFWAEQYR EIEATTDFKN HNLPLARIKK IMKADEDVRM
101: IAAEAPVVFA RACEMFILEL THRGWAHAEE NKRRTLQKSD IAAAIARTEV FDFLVDIVPR DDAKDADAAA AAAAAAAAAG IPRPAAGVPA TDPLAYYYVP
201: QQ

Best Arabidopsis Sequence Match ( AT1G54830.1 )
(BLAST)

001: MDQQGQSSAM NYGSNPYQTN AMTTTPTGSD HPAYHQIHQQ QQQQLTQQLQ SFWETQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN

Arabidopsis Description

NFYC3Nuclear transcription factor Y subunit C-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.