CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14613	Sorghum	nucleus	53.58	47.07
EES16679	Sorghum	nucleus	52.1	45.47
OQU83181	Sorghum	nucleus	15.56	36.84
PGSC0003DMT400090065	Potato	nucleus	10.12	27.7
Os01t0580400-01	Rice	nucleus	29.88	27.38
Os01t0102400-01	Rice	nucleus	28.4	27.32
Solyc11g016920.1.1	Tomato	cytosol	9.14	26.81
Solyc03g110840.1.1	Tomato	nucleus	10.62	26.54
PGSC0003DMT400039471	Potato	nucleus	9.88	25.97
Solyc03g110850.1.1	Tomato	cytosol	10.12	25.15
Solyc02g021330.1.1	Tomato	cytosol	8.89	23.53
EER96945	Sorghum	nucleus	11.6	23.27
EES15444	Sorghum	nucleus	11.11	22.39
EES13127	Sorghum	mitochondrion	6.91	21.88
KXG39763	Sorghum	nucleus	13.33	21.86
Solyc11g016910.1.1	Tomato	nucleus	4.94	21.51
KRH70416	Soybean	cytosol	7.65	21.38
KXG24590	Sorghum	nucleus	12.84	20.55
EER88787	Sorghum	nucleus	12.35	19.61
KXG24666	Sorghum	nucleus	10.62	19.2

Protein Annotations

Gene3D:1.10.20.10	MapMan:35.2	EntrezGene:8082814	UniProt:C5YTK1	InterPro:CBFA_NFYB_domain	EnsemblPlants:EES15819
ProteinID:EES15819	ProteinID:EES15819.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF43	EnsemblPlantsGene:SORBI_3008G071900	SUPFAM:SSF47113	UniParc:UPI0001A88066
RefSeq:XP_002441981.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:9703687..9704904

Molecular Weight (calculated)

45582.8 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.478

Length

405 amino acids

Sequence
(BLAST)

001: MDHPDNISTP QRMSMPSSEQ QMIDEFWREK QEEIEAIDDF SKRAIPMTCL KKIICAEKGK MMMTFDTPSF VTKACEIFVQ ELSLRSWICA NSHHRDIILD
101: SDIAEAIASM ESYVFLNDVL CKHQAEHNSA HHPKSIKKSS HNRLTDQPQT SGHPRYNKYP MPQFISQSAR YPLFALPPPL PPTNDYHVPL PLRFLPRGAC
201: PLMATTITQT PVLGGTIHHL PNIPNEGYMS RTPSMDTYYV ESASKNNVVS QDGDVTFHYP FVPPVAWKSL SIPPVANSNG PISTGIIELH HTKQLVAHMG
301: NTTHASHLNV THGRLDTEVI STTNLNGKNN EHINWDETDM ADDSLLMEFW EDVMMEEDRS TLPDTTSSTV GIVPVPCDKP DPEGFDPESF LVDDIIFDES
401: TNKEA

Best Arabidopsis Sequence Match ( AT3G48590.1 )
(BLAST)

001: MDTNNQQPPP SAAGIPPPPP GTTISAAGGG ASYHHLLQQQ QQQLQLFWTY QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI
101: LELTIRSWLH AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA AVLGGGMVVA PTASGVPYYY PPMGQPAGPG GMMIGRPAMD PNGVYVQPPS
201: QAWQSVWQTS TGTGDDVSYG SGGSSGQGNL DGQG

Arabidopsis Description

NFYC1Nuclear transcription factor Y subunit C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMP0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.