Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g110840.1.1 | Tomato | nucleus | 87.16 | 79.63 |
| PGSC0003DMT400039471 | Potato | nucleus | 72.3 | 69.48 |
| PGSC0003DMT400039470 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 50.68 | 32.61 |
| PGSC0003DMT400023211 | Potato | nucleus | 41.89 | 24.22 |
| PGSC0003DMT400008660 | Potato | nucleus | 39.19 | 23.02 |
| PGSC0003DMT400039254 | Potato | nucleus | 39.19 | 22.92 |
| KRH70416 | Soybean | cytosol | 20.27 | 20.69 |
| OQU83181 | Sorghum | nucleus | 20.95 | 18.13 |
| Os10t0191900-00 | Rice | nucleus | 27.7 | 12.24 |
| HORVU7Hr1G082930.1 | Barley | nucleus | 33.11 | 12.04 |
| Os05t0304800-01 | Rice | nucleus | 26.35 | 11.93 |
| TraesCS7A01G336700.1 | Wheat | cytosol | 33.11 | 11.84 |
| TraesCS7B01G248300.1 | Wheat | cytosol | 32.43 | 11.65 |
| TraesCS7D01G344400.1 | Wheat | cytosol | 31.08 | 11.19 |
| Os01t0102400-01 | Rice | nucleus | 29.73 | 10.45 |
| EES15819 | Sorghum | nucleus | 27.7 | 10.12 |
| Os01t0580400-01 | Rice | nucleus | 29.73 | 9.95 |
| Zm00001d023466_P001 | Maize | cytosol, mitochondrion, nucleus | 24.32 | 8.2 |
| EES14613 | Sorghum | nucleus | 24.32 | 7.81 |
| EES16679 | Sorghum | nucleus | 23.65 | 7.54 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400090065 | EnsemblPlantsGene:PGSC0003DMG400039636 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF39 | PFAM:PF00808 | PGSC:PGSC0003DMG400039636 |
| SUPFAM:SSF47113 | UniParc:UPI000294C792 | UniProt:M1DJJ7 | MapMan:15.5.51.3 | : | : |
Description
Ccaat-binding transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400039636]
Coordinates
chr3:+:50426085..50426531
Molecular Weight (calculated)
16681.6 Da
IEP (calculated)
4.667
GRAVY (calculated)
-0.557
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MENNSEKSAV NADQSAGYPT LEMFWKSQQS EMENVNDFKS RLLPPPTRIK KIMKKDEDVR MVAAESPVLM AKACELFIQD LTLRSSLNAQ ENHRRILKKD
101: DLTDVIVQTD YFDFLLDVVH ATDPFTPSSV PFYAAGGSNG QDGNNLDH
101: DLTDVIVQTD YFDFLLDVVH ATDPFTPSSV PFYAAGGSNG QDGNNLDH
001: MDNNNNNNNQ QPPPTSVYPP GSAVTTVIPP PPSGSASIVT GGGATYHHLL QQQQQQLQMF WTYQRQEIEQ VNDFKNHQLP LARIKKIMKA DEDVRMISAE
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
101: APILFAKACE LFILELTIRS WLHAEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREEIK EEEDAASALG GGGMVAPAAS GVPYYYPPMG QPAVPGGMMI
201: GRPAMDPSGV YAQPPSQAWQ SVWQNSAGGG DDVSYGSGGS SGHGNLDSQG
Arabidopsis Description
NFYC4NF-YC4 [Source:UniProtKB/TrEMBL;Acc:A0A178UJL4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.