CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43409	Soybean	nucleus	45.31	42.44
Os09t0480700-01	Rice	nucleus	33.85	38.69
KRH22187	Soybean	mitochondrion	23.96	37.4
Zm00001d020874_P001	Maize	extracellular	37.5	36.0
TraesCS5D01G265000.1	Wheat	nucleus	38.02	35.96
KRH27143	Soybean	mitochondrion	22.92	35.77
TraesCS5B01G255900.1	Wheat	nucleus	37.5	35.47
TraesCS5A01G256500.1	Wheat	nucleus	37.5	35.47
TraesCS7D01G237100.1	Wheat	nucleus	36.46	35.18
TraesCS7B01G135000.1	Wheat	nucleus	36.46	35.18
TraesCS7A01G239500.1	Wheat	nucleus	36.46	35.18
EER96945	Sorghum	nucleus	36.98	35.15
Zm00001d052838_P001	Maize	nucleus	36.98	35.15
EES15444	Sorghum	nucleus	36.46	34.83
Os08t0496500-01	Rice	nucleus	36.98	34.63
Zm00001d031310_P001	Maize	nucleus	35.94	34.5
KRH20891	Soybean	nucleus	43.23	34.16
GSMUA_Achr4P03920_001	Banana	nucleus	21.88	30.88
KRH68581	Soybean	cytoskeleton, cytosol, nucleus, plastid	38.02	30.8
KRH20893	Soybean	nucleus	42.19	30.34
KRH63772	Soybean	nucleus	35.42	30.22
KRH54177	Soybean	nucleus	35.42	29.69
KRH13746	Soybean	nucleus	40.1	28.73
KRG96853	Soybean	nucleus	38.54	28.68
KRH43702	Soybean	nucleus	40.1	28.41
KRG92828	Soybean	nucleus	38.54	28.14
KRH33966	Soybean	nucleus	38.54	28.03
GSMUA_Achr4P13170_001	Banana	nucleus	20.83	27.4
HORVU7Hr1G048760.3	Barley	plastid	36.46	26.92
GSMUA_Achr3P11990_001	Banana	nucleus	21.88	26.42
Zm00001d005993_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	34.38	23.66
KRH70416	Soybean	cytosol	17.71	23.45
GSMUA_Achr1P19420_001	Banana	nucleus	22.4	22.05
GSMUA_Achr9P11550_001	Banana	cytosol, nucleus, plasma membrane	36.46	10.26

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:100808635	MapMan:15.5.51.3	EMBL:ACUP02008324	InterPro:CBFA_NFYB_domain	EnsemblPlantsGene:GLYMA_13G207700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016602	GO:GO:0046982
InterPro:Histone-fold	UniProt:I1M135	InterPro:IPR009072	EnsemblPlants:KRH20896	ProteinID:KRH20896	ProteinID:KRH20896.1
PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF39	SUPFAM:SSF47113	UniParc:UPI000233C487	SEG:seg

Description

hypothetical protein

Coordinates

chr13:-:32124827..32128053

Molecular Weight (calculated)

21270.3 Da

IEP (calculated)

7.726

GRAVY (calculated)

-0.652

Length

192 amino acids

Sequence
(BLAST)

001: MDQNKQGEAA EGGNIGHPAH GKNQEEQSNP MIAPTNPPKK KSLEEQLNDF WAAQREEAKM TTNFKTHSLP LSRIKKIIKT DKDVKMISAE TPVVFAKACE
101: MFIKELTIRA WANTEARKGK ILSQRDLVSA ISQTASFDFL DDIMPKDAGL PRTSIASTEN AYLNMPPQQN VAGLPYDAPT MAFPNLNHHA PN

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.