Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G237100.1 | Wheat | nucleus | 99.5 | 99.5 |
| TraesCS7B01G135000.1 | Wheat | nucleus | 99.0 | 99.0 |
| TraesCS5A01G256500.1 | Wheat | nucleus | 82.91 | 81.28 |
| EES15444 | Sorghum | nucleus | 78.89 | 78.11 |
| Zm00001d031310_P001 | Maize | nucleus | 78.39 | 78.0 |
| HORVU7Hr1G048760.3 | Barley | plastid | 99.0 | 75.77 |
| Zm00001d052838_P001 | Maize | nucleus | 73.37 | 72.28 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 39.2 | 57.35 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 37.19 | 50.68 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 38.19 | 47.8 |
| CDX93525 | Canola | nucleus | 52.26 | 47.27 |
| Bra018589.1-P | Field mustard | nucleus | 51.76 | 46.82 |
| TraesCS6A01G157900.1 | Wheat | nucleus | 59.8 | 46.48 |
| TraesCS7A01G475400.1 | Wheat | nucleus | 59.3 | 45.91 |
| KRH68581 | Soybean | cytoskeleton, cytosol, nucleus, plastid | 54.27 | 45.57 |
| Bra030749.1-P | Field mustard | nucleus | 49.75 | 45.41 |
| CDY06341 | Canola | nucleus | 51.26 | 44.74 |
| Bra031651.1-P | Field mustard | nucleus | 51.26 | 44.74 |
| AT1G54830.3 | Thale cress | nucleus | 48.74 | 44.7 |
| TraesCS4A01G081000.1 | Wheat | nucleus | 53.27 | 43.98 |
| PGSC0003DMT400023211 | Potato | nucleus | 56.28 | 43.75 |
| AT1G08970.4 | Thale cress | nucleus | 50.75 | 43.72 |
| PGSC0003DMT400008660 | Potato | nucleus | 55.28 | 43.65 |
| Solyc01g079870.2.1 | Tomato | nucleus | 56.28 | 43.41 |
| KRG96853 | Soybean | nucleus | 54.27 | 41.86 |
| VIT_05s0020g02790.t01 | Wine grape | nucleus | 54.27 | 41.22 |
| VIT_14s0128g00250.t01 | Wine grape | nucleus | 54.27 | 41.06 |
| CDY22654 | Canola | cytosol | 51.76 | 40.55 |
| CDY31119 | Canola | nucleus | 38.69 | 40.31 |
| TraesCS1A01G354900.1 | Wheat | mitochondrion | 27.14 | 40.0 |
| KRG92828 | Soybean | nucleus | 52.76 | 39.92 |
| KRH43409 | Soybean | nucleus | 40.7 | 39.51 |
| KRH33966 | Soybean | nucleus | 52.26 | 39.39 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 38.19 | 38.97 |
| TraesCS1A01G355900.1 | Wheat | mitochondrion | 26.63 | 37.59 |
| KRH20896 | Soybean | nucleus | 35.18 | 36.46 |
| TraesCS7A01G474800.1 | Wheat | nucleus | 42.71 | 36.32 |
| CDY32142 | Canola | mitochondrion, nucleus | 49.75 | 33.45 |
| KRH20891 | Soybean | nucleus | 39.2 | 32.1 |
| CDX95019 | Canola | cytosol, mitochondrion, nucleus | 51.76 | 31.5 |
| KRH20893 | Soybean | nucleus | 39.2 | 29.21 |
| TraesCS7A01G336700.1 | Wheat | cytosol | 25.13 | 12.08 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G239500.1 | EnsemblPlantsGene:TraesCS7A01G239500 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:CBFA_NFYB_domain | InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF46 |
| PFAM:PF00808 | SEG:seg | SUPFAM:SSF47113 | MapMan:15.5.51.3 | : | : |
Description
No Description!
Coordinates
chr7A:+:214301750..214302349
Molecular Weight (calculated)
21521.7 Da
IEP (calculated)
5.609
GRAVY (calculated)
-0.266
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAKSTTPPP PGPVLGAPVG YPPAAVYPAA PPPGYPHAPA LYAPQPPPAA VAAASQQTAA QQQQQLQVFW AEQYREIEAT TDFKNHNLPL ARIKKIMKAD
101: EDVRMIAAEA PVVFARACEM FILELTHRGW AHAEENKRRT LQKSDIAAAI ARTEVFDFLV DIVPRDEAKD AEAAVAAGMP HPAAGMPAAD MGYYYVPQQ
101: EDVRMIAAEA PVVFARACEM FILELTHRGW AHAEENKRRT LQKSDIAAAI ARTEVFDFLV DIVPRDEAKD AEAAVAAGMP HPAAGMPAAD MGYYYVPQQ
001: MDQQGQSSAM NYGSNPYQTN AMTTTPTGSD HPAYHQIHQQ QQQQLTQQLQ SFWETQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS AEAPVVFARA
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN
101: CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGGVG AEAATAAGYP YGYLPPGTAP IGNPGMVMGN PGAYPPNPYM
201: GQPMWQQPGP EQQDPDN
Arabidopsis Description
NFYC3Nuclear transcription factor Y subunit C-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVL3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.