Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytoskeleton, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG96853 | Soybean | nucleus | 98.31 | 90.31 |
| KRG92828 | Soybean | nucleus | 85.23 | 76.81 |
| KRH33966 | Soybean | nucleus | 84.81 | 76.14 |
| Os09t0480700-01 | Rice | nucleus | 42.62 | 60.12 |
| Zm00001d020874_P001 | Maize | extracellular | 48.1 | 57.0 |
| GSMUA_Achr4P03920_001 | Banana | nucleus | 32.49 | 56.62 |
| EER96945 | Sorghum | nucleus | 47.68 | 55.94 |
| TraesCS7D01G237100.1 | Wheat | nucleus | 45.57 | 54.27 |
| TraesCS7B01G135000.1 | Wheat | nucleus | 45.57 | 54.27 |
| TraesCS7A01G239500.1 | Wheat | nucleus | 45.57 | 54.27 |
| TraesCS5B01G255900.1 | Wheat | nucleus | 45.99 | 53.69 |
| TraesCS5A01G256500.1 | Wheat | nucleus | 45.99 | 53.69 |
| KRH13746 | Soybean | nucleus | 60.34 | 53.36 |
| TraesCS5D01G265000.1 | Wheat | nucleus | 45.57 | 53.2 |
| KRH43702 | Soybean | nucleus | 60.34 | 52.77 |
| EES15444 | Sorghum | nucleus | 44.3 | 52.24 |
| KRH63772 | Soybean | nucleus | 49.37 | 52.0 |
| GSMUA_Achr3P11990_001 | Banana | nucleus | 34.6 | 51.57 |
| Zm00001d031310_P001 | Maize | nucleus | 43.46 | 51.5 |
| Os08t0496500-01 | Rice | nucleus | 44.3 | 51.22 |
| KRH54177 | Soybean | nucleus | 49.37 | 51.09 |
| Zm00001d052838_P001 | Maize | nucleus | 43.46 | 50.99 |
| GSMUA_Achr4P13170_001 | Banana | nucleus | 30.8 | 50.0 |
| KRH22187 | Soybean | mitochondrion | 23.63 | 45.53 |
| KRH43409 | Soybean | nucleus | 39.24 | 45.37 |
| KRH27143 | Soybean | mitochondrion | 22.78 | 43.9 |
| HORVU7Hr1G048760.3 | Barley | plastid | 45.99 | 41.92 |
| GSMUA_Achr1P19420_001 | Banana | nucleus | 33.33 | 40.51 |
| KRH20891 | Soybean | nucleus | 40.08 | 39.09 |
| KRH20896 | Soybean | nucleus | 30.8 | 38.02 |
| KRH20893 | Soybean | nucleus | 40.08 | 35.58 |
| Zm00001d005993_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 37.97 | 32.26 |
| KRH70416 | Soybean | cytosol | 16.46 | 26.9 |
| GSMUA_Achr9P11550_001 | Banana | cytosol, nucleus, plasma membrane | 54.85 | 19.06 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | EMBL:ACUP02002121 | InterPro:CBFA_NFYB_domain | EnsemblPlantsGene:GLYMA_03G239400 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | UniProt:K7KGQ0 | ProteinID:KRH68580.1 | EnsemblPlants:KRH68581 |
| ProteinID:KRH68581 | ProteinID:KRH68581.1 | PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF75 | SUPFAM:SSF47113 |
| UniParc:UPI0002960CAE | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:43822283..43824277
Molecular Weight (calculated)
26211.3 Da
IEP (calculated)
6.601
GRAVY (calculated)
-0.435
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHQGHSQNP SMGVVGSGAQ LAYGSNPYQP GQITGPPGSV VTSVGTIQST GQPAGAQLGQ HQLAYQHIHQ QQQHQLQQQL QQFWSSQYQE IEKVTDFKNH
101: SLPLARIKKI MKADEDVRMI SAEAPVIFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI PRGTMPVAGP
201: ADALPYCYMP PQHPSQVGAA GVIMGKPVMD PNMYAQQ
101: SLPLARIKKI MKADEDVRMI SAEAPVIFAR ACEMFILELT LRSWNHTEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRE DLKDEVLASI PRGTMPVAGP
201: ADALPYCYMP PQHPSQVGAA GVIMGKPVMD PNMYAQQ
001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
Arabidopsis Description
NFYC9Nuclear transcription factor Y subunit C-9 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.