Factsheet for Os02t0170500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G147300.1	Wheat	nucleus	86.1	87.11
TraesCS6A01G157900.1	Wheat	nucleus	85.71	86.72
HORVU6Hr1G032200.1	Barley	nucleus	86.49	86.15
KXG24590	Sorghum	nucleus	82.63	84.58
Zm00001d024230_P001	Maize	nucleus, plastid	78.38	80.88
Os06t0667100-01	Rice	cytosol, nucleus, plastid	77.22	80.0
TraesCS6B01G185700.1	Wheat	cytosol	86.1	76.63
Bra003334.1-P	Field mustard	nucleus	46.72	65.76
CDX67737	Canola	nucleus	46.33	63.83
AT1G56170.2	Thale cress	nucleus	49.03	63.82
Os09t0480700-01	Rice	nucleus	39.0	60.12
KRH13746	Soybean	nucleus	61.0	58.96
VIT_19s0085g00520.t01	Wine grape	cytosol	60.62	58.36
KRH43702	Soybean	nucleus	61.0	58.3
GSMUA_Achr11P...	Banana	cytosol	57.14	58.27
Os08t0496500-01	Rice	nucleus	45.95	58.05
GSMUA_Achr5P26790_001	Banana	cytosol	44.4	51.34
Os03t0251350-00	Rice	nucleus	47.88	50.41
Os04t0683400-00	Rice	mitochondrion	23.17	48.0
GSMUA_Achr11P...	Banana	cytosol	55.98	47.23
GSMUA_Achr3P23600_001	Banana	cytosol, mitochondrion, nucleus, plastid	44.02	44.19
Os08t0206500-00	Rice	nucleus	36.29	33.33
Os10t0191900-00	Rice	nucleus	18.92	14.63
Os05t0304800-01	Rice	nucleus	18.15	14.37
Os01t0102400-01	Rice	nucleus	22.39	13.78
Os01t0580400-01	Rice	nucleus	22.39	13.12

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.3	EntrezGene:4328444	EMBL:AK243429	ProteinID:BAD25190.1	ProteinID:BAD25492.1
ProteinID:BAF07943.2	ProteinID:BAF64449.1	ProteinID:BAS77198.1	InterPro:CBFA_NFYB_domain	ncoils:Coil	ProteinID:EAZ21902.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0046982	EMBL:HQ162683	InterPro:Histone-fold	InterPro:IPR009072	EnsemblPlantsGene:Os02g0170500
EnsemblPlants:Os02t0170500-01	PFAM:PF00808	PANTHER:PTHR10252	PANTHER:PTHR10252:SF74	UniProt:Q6H707	SUPFAM:SSF47113
UniParc:UPI00003B43A7	RefSeq:XP_015627520.1	RefSeq:XP_015627522.1	SEG:seg	:	:

Description

HAP5A SUBUNIT OF CCAAT-BOX BINDING COMPLEXHistone-fold domain containing protein. (Os02t0170500-01)

Coordinates

chr2:-:3846223..3850113

Molecular Weight (calculated)

28790.9 Da

IEP (calculated)

4.628

GRAVY (calculated)

-0.626

Length

259 amino acids

Sequence
(BLAST)

001: MEPSSQPQPV MGVATGGSQA YPPPAAAYPP QAMVPGAPAV VPPGSQPSAP FPTNPAQLSA QHQLVYQQAQ QFHQQLQQQQ QQQLREFWAN QMEEIEQTTD
101: FKNHSLPLAR IKKIMKADED VRMISAEAPV VFAKACEVFI LELTLRSWMH TEENKRRTLQ KNDIAAAITR TDIYDFLVDI VPRDEMKEEG LGLPRVGLPP
201: NVGGAADTYP YYYVPAQQGP GSGMMYGGQQ GHPVTYVWQQ PQEQQEEAPE EQHSLPESS

Best Arabidopsis Sequence Match ( AT1G56170.1 )
(BLAST)

001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES

Arabidopsis Description

NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.