Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G147300.1 | Wheat | nucleus | 96.15 | 97.66 |
| TraesCS6A01G157900.1 | Wheat | nucleus | 95.77 | 97.27 |
| Os02t0170500-01 | Rice | nucleus | 86.15 | 86.49 |
| TraesCS6B01G185700.1 | Wheat | cytosol | 96.15 | 85.91 |
| KXG24590 | Sorghum | nucleus | 82.69 | 84.98 |
| Zm00001d024230_P001 | Maize | nucleus, plastid | 78.85 | 81.67 |
| HORVU7Hr1G108370.1 | Barley | nucleus | 68.46 | 68.46 |
| Bra003334.1-P | Field mustard | nucleus | 47.69 | 67.39 |
| CDX67737 | Canola | nucleus | 46.92 | 64.89 |
| AT1G56170.2 | Thale cress | nucleus | 48.46 | 63.32 |
| GSMUA_Achr11P... | Banana | cytosol | 56.92 | 58.27 |
| VIT_19s0085g00520.t01 | Wine grape | cytosol | 58.46 | 56.51 |
| KRH13746 | Soybean | nucleus | 58.08 | 56.34 |
| KRH43702 | Soybean | nucleus | 58.46 | 56.09 |
| GSMUA_Achr5P26790_001 | Banana | cytosol | 43.46 | 50.45 |
| HORVU4Hr1G062890.2 | Barley | nucleus | 46.54 | 50.21 |
| HORVU7Hr1G048760.3 | Barley | plastid | 45.38 | 45.38 |
| GSMUA_Achr11P... | Banana | cytosol | 52.31 | 44.3 |
| GSMUA_Achr3P23600_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 41.54 | 41.86 |
| HORVU1Hr1G081010.1 | Barley | mitochondrion | 20.38 | 38.97 |
| HORVU7Hr1G082930.1 | Barley | nucleus | 20.77 | 13.27 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.5.51.3 | EMBL:AK364692 | InterPro:CBFA_NFYB_domain | ncoils:Coil | UniProt:F2DLC4 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0046982 | EnsemblPlantsGene:HORVU6Hr1G032200 | EnsemblPlants:HORVU6Hr1G032200.1 | InterPro:Histone-fold | InterPro:IPR009072 |
| PFAM:PF00808 | PANTHER:PTHR10252 | PANTHER:PTHR10252:SF74 | SUPFAM:SSF47113 | UniParc:UPI0002006913 | SEG:seg |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DLC4]
Coordinates
chrchr6H:-:139749583..139754711
Molecular Weight (calculated)
28590.8 Da
IEP (calculated)
4.601
GRAVY (calculated)
-0.494
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPSSQPEPV VGVATSGSQA YPPAAAYPAP AMVPGGPAAI PPGSQPAVPF PANPAQLSAQ HQLVYQQAQQ FHQQLQQQQQ QQLREFWATQ MEEIEQAADF
101: KNHTLPLARI KKIMKADEDV RMISAEAPVV FAKACEVFIL ELTLRSWMHT EENKRRTLQK NDIAAAITRT DIYDFLVDII PRDDMKEEGL GLPRVGLPPA
201: ALGAPADAYP PYYYLPAQQV PGVGMVYGGQ QGHPVAYAWQ QPQGQQTEEA PEEQQQSPSN
101: KNHTLPLARI KKIMKADEDV RMISAEAPVV FAKACEVFIL ELTLRSWMHT EENKRRTLQK NDIAAAITRT DIYDFLVDII PRDDMKEEGL GLPRVGLPPA
201: ALGAPADAYP PYYYLPAQQV PGVGMVYGGQ QGHPVAYAWQ QPQGQQTEEA PEEQQQSPSN
001: MEQSEEGQQQ QQQGVMDYVP PHAYQSGPVN AASHMAFQQA HHFHHHHQQQ QQQQLQMFWA NQMQEIEHTT DFKNHTLPLA RIKKIMKADE DVRMISAEAP
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
101: VIFAKACEMF ILELTLRAWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD IIPRDELKEE GLGVTKGTIP SVVGSPPYYY LQQQGMMQHW PQEQHPDES
Arabidopsis Description
NFYC2Nuclear transcription factor Y subunit C-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCG7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.