Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000299.1-P | Field mustard | cytosol | 19.87 | 41.67 |
| Bra032444.1-P | Field mustard | cytosol | 17.88 | 37.5 |
| CDY06192 | Canola | cytosol | 17.88 | 37.5 |
| CDY09997 | Canola | cytosol | 17.88 | 37.5 |
| CDY28045 | Canola | cytosol | 20.53 | 36.9 |
| CDY35936 | Canola | cytosol | 20.53 | 36.9 |
| Bra030632.1-P | Field mustard | cytosol | 19.21 | 35.37 |
| PGSC0003DMT400086481 | Potato | cytosol | 17.88 | 30.34 |
| CDY09996 | Canola | cytosol | 17.22 | 28.57 |
| VIT_14s0108g01000.t01 | Wine grape | cytosol | 23.18 | 22.44 |
| Solyc12g009630.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 21.85 | 21.15 |
| AT3G29000.1 | Thale cress | endoplasmic reticulum | 26.49 | 20.62 |
| AT5G39670.1 | Thale cress | plastid | 27.81 | 20.59 |
| Os03t0812800-00 | Rice | extracellular | 29.14 | 20.47 |
| Os03t0812400-01 | Rice | endoplasmic reticulum, plastid | 26.49 | 18.78 |
| KRH01190 | Soybean | cytosol, nucleus, vacuole | 25.17 | 18.36 |
| KRH16684 | Soybean | cytosol | 23.18 | 18.13 |
| KRH40081 | Soybean | cytosol | 24.5 | 17.87 |
| Os11t0600500-00 | Rice | endoplasmic reticulum | 19.87 | 15.71 |
| Os09t0412300-01 | Rice | plastid | 9.27 | 14.43 |
Protein Annotations
| EnsemblPlants:Os12t0140050-00 | EnsemblPlantsGene:Os12g0140050 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR45512 | PFAM:PF13833 |
| PFscan:PS50222 | ProteinID:BAT15832.1 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 |
| UniParc:UPI00039397AA | UniProt:A0A0P0Y6T7 | MapMan:35.2 | : | : | : |
Description
Similar to EF hand family protein. (Os12t0140050-00)
Coordinates
chr12:+:1933377..1937604
Molecular Weight (calculated)
17242.2 Da
IEP (calculated)
4.484
GRAVY (calculated)
-0.558
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: QPLFQPLNFL LCDKHNTHST CPSEHSETKA RTELTHGDVD VVIAALGLRV NREGDECSLV EDEALVLLEE KQASWEELEE AFSVFDGDGD GFISPLELQS
101: VMRRLGLQHD AGHEECERML KVFDRDGDGM INFDEFKLLY YWKRSKRAGK N
101: VMRRLGLQHD AGHEECERML KVFDRDGDGM INFDEFKLLY YWKRSKRAGK N
001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC
Arabidopsis Description
CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.