Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032444.1-P | Field mustard | cytosol | 41.57 | 51.39 |
| CDY06192 | Canola | cytosol | 41.57 | 51.39 |
| CDY09997 | Canola | cytosol | 41.57 | 51.39 |
| Bra000299.1-P | Field mustard | cytosol | 40.45 | 50.0 |
| CDY35936 | Canola | cytosol | 44.94 | 47.62 |
| CDY28045 | Canola | cytosol | 44.94 | 47.62 |
| Bra030632.1-P | Field mustard | cytosol | 42.7 | 46.34 |
| CDY09996 | Canola | cytosol | 41.57 | 40.66 |
| GSMUA_Achr7P21710_001 | Banana | cytosol | 33.71 | 22.39 |
| Solyc12g009630.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 37.08 | 21.15 |
| GSMUA_Achr9P17010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.46 | 17.95 |
| Os12t0140050-00 | Rice | cytosol | 30.34 | 17.88 |
| TraesCS1A01G435200.1 | Wheat | endoplasmic reticulum, extracellular | 37.08 | 17.74 |
| EER98893 | Sorghum | plastid | 37.08 | 17.46 |
| HORVU1Hr1G094230.1 | Barley | extracellular, golgi | 35.96 | 17.2 |
| GSMUA_AchrUn_... | Banana | cytosol | 31.46 | 16.97 |
| Zm00001d005766_P001 | Maize | plastid | 33.71 | 16.67 |
| HORVU1Hr1G094160.1 | Barley | extracellular | 34.83 | 16.67 |
| PGSC0003DMT400003364 | Potato | endoplasmic reticulum, golgi | 34.83 | 16.58 |
| TraesCS1A01G435100.1 | Wheat | extracellular | 32.58 | 16.57 |
| OQU88717 | Sorghum | cytosol | 33.71 | 16.3 |
| TraesCS1B01G470900.1 | Wheat | endoplasmic reticulum, golgi | 33.71 | 16.13 |
| PGSC0003DMT400044026 | Potato | cytosol, plastid | 33.71 | 16.13 |
| TraesCS5D01G238700.1 | Wheat | plastid | 31.46 | 16.09 |
| TraesCS1D01G444200.1 | Wheat | endoplasmic reticulum, golgi | 34.83 | 16.06 |
| PGSC0003DMT400064699 | Potato | golgi | 34.83 | 16.06 |
| TraesCS5A01G229000.1 | Wheat | plastid | 31.46 | 15.73 |
| TraesCS1B01G471000.1 | Wheat | endoplasmic reticulum, golgi | 32.58 | 15.59 |
| HORVU5Hr1G066260.1 | Barley | plastid | 31.46 | 15.38 |
| PGSC0003DMT400050271 | Potato | cytosol | 32.58 | 14.01 |
| Zm00001d013004_P001 | Maize | vacuole | 33.71 | 13.7 |
| Os03t0812400-01 | Rice | endoplasmic reticulum, plastid | 31.46 | 13.15 |
| Os03t0812800-00 | Rice | extracellular | 31.46 | 13.02 |
| OQU90756 | Sorghum | endoplasmic reticulum, vacuole | 32.58 | 12.78 |
| HORVU5Hr1G111520.1 | Barley | plastid | 29.21 | 12.62 |
| TraesCS5B01G227700.1 | Wheat | plastid | 30.34 | 11.84 |
| TraesCS5A01G467800.1 | Wheat | endoplasmic reticulum, plastid | 25.84 | 11.56 |
| TraesCS5D01G481000.1 | Wheat | extracellular, plastid | 25.84 | 11.56 |
| TraesCS5B01G480300.1 | Wheat | endoplasmic reticulum, plastid | 25.84 | 11.33 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400086481 | EnsemblPlantsGene:PGSC0003DMG400036052 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR10891 | PANTHER:PTHR10891:SF546 |
| PFAM:PF13499 | PFscan:PS50222 | PGSC:PGSC0003DMG400036052 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 |
| UniParc:UPI00029664EA | UniProt:M1DBV1 | MapMan:35.2 | : | : | : |
Description
EF hand family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400036052]
Coordinates
chr11:-:31239874..31240301
Molecular Weight (calculated)
10127.2 Da
IEP (calculated)
4.340
GRAVY (calculated)
-0.364
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MNAEELRRMF QIFDKNDDGH ITMNELNDSL ENMGIFIPDL LGSLGLKQGG NVEDCRKMIN NVDVDGDGRI DFMEFKKMMM RGVGFASFT
001: MDSTELNRVF QMFDKDGDGK ITTKELNESF KNLGIIIPED ELTQIIQKID VNGDGCVDIE EFGELYKTIM VEDEDEVGEE DMKEAFNVFD RNGDGFITVD
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
Arabidopsis Description
CML6Calmodulin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.