Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g115930.1.1 | Tomato | cytosol | 72.46 | 74.26 |
| PGSC0003DMT400044026 | Potato | cytosol, plastid | 32.85 | 36.56 |
| PGSC0003DMT400086481 | Potato | cytosol | 14.01 | 32.58 |
| PGSC0003DMT400003364 | Potato | endoplasmic reticulum, golgi | 23.19 | 25.67 |
| PGSC0003DMT400064699 | Potato | golgi | 23.67 | 25.39 |
Protein Annotations
| Gene3D:1.10.238.10 | EntrezGene:107058370 | MapMan:35.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | InterPro:IPR002048 | UniProt:M1BQ19 | PFAM:PF13499 |
| EnsemblPlantsGene:PGSC0003DMG400019527 | PGSC:PGSC0003DMG400019527 | EnsemblPlants:PGSC0003DMT400050271 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR45512 |
| PANTHER:PTHR45512:SF1 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI000294C11F | RefSeq:XP_015159486.1 | SEG:seg |
Description
Calcium ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019527]
Coordinates
chr3:-:55772209..55773150
Molecular Weight (calculated)
23882.2 Da
IEP (calculated)
3.953
GRAVY (calculated)
-0.215
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MENIFSISAI SPSLLGKKIA DDLNQFFCII LRCTILSILS TFQDLSSCFS FSLRAILLFF ITLRNALTRD DHDHDNDNNP PDAKNCYENC DNEEEIVEVV
101: IMDKLMSLCN SNENKTEYAE VSSLFDEVEP SFEEIKEAFD VFDENGDGYI DASELMKLIW RMGLSEFSMN DCKKMIMAFD ENRDGKIEFS EFLKLMEQSF
201: RDPVELD
101: IMDKLMSLCN SNENKTEYAE VSSLFDEVEP SFEEIKEAFD VFDENGDGYI DASELMKLIW RMGLSEFSMN DCKKMIMAFD ENRDGKIEFS EFLKLMEQSF
201: RDPVELD
001: MESKSSSSSL PLFALFNFFL ISFCRWVSST RIFLSRFVPL LQHHQRVFDK KNNKDQQETL TKQEDDDDDD DDDDDDDDDD IDISREEAEM VMRSLGLFYN
101: DDQLQEQYSA KEVSSLFEEK EASLEEVKQA FDVFDENKDG FIDAIELQRV LTILGFKQGS YLDNCLVMIR SLDGNKDGKI DFNEFVKFME TSFY
101: DDQLQEQYSA KEVSSLFEEK EASLEEVKQA FDVFDENKDG FIDAIELQRV LTILGFKQGS YLDNCLVMIR SLDGNKDGKI DFNEFVKFME TSFY
Arabidopsis Description
CML45Probable calcium-binding protein CML30 [Source:UniProtKB/Swiss-Prot;Acc:Q9MBG5]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.