Factsheet for PGSC0003DMT400044026

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
plasma membrane 2
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g069740.1.1	Tomato	endoplasmic reticulum	62.37	62.7
PGSC0003DMT400086481	Potato	cytosol	16.13	33.71
PGSC0003DMT400050271	Potato	cytosol	36.56	32.85
PGSC0003DMT400003364	Potato	endoplasmic reticulum, golgi	26.88	26.74
PGSC0003DMT400064699	Potato	golgi	26.88	25.91

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:107059253	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1BFI0	PFAM:PF13499
EnsemblPlantsGene:PGSC0003DMG400017084	PGSC:PGSC0003DMG400017084	EnsemblPlants:PGSC0003DMT400044026	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR45512
PANTHER:PTHR45512:SF1	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000295438C	RefSeq:XP_015161230.1	SEG:seg

Description

Calcium-binding EF hand family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017084]

Coordinates

chr6:-:37724604..37725164

Molecular Weight (calculated)

21196.7 Da

IEP (calculated)

3.835

GRAVY (calculated)

-0.145

Length

186 amino acids

Sequence
(BLAST)

001: MEKIFSFSTQ ANKIGDAFNH FNSTILSYVI FCLVITSQEF SSLFRAILFV FNTPFNKPDN AETSSKANVN TEGLLEEDVE LVLDTLMSFC NQNGDKNIDE
101: VELVDVFDSF DETEPSLEEV KEAFDVFDEN GDGYIDANEL DKVISKMGFL ELSVLDCQRM IAPFDENRDG RIEFGEFVKL MDHIFQ

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.