Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G094230.1 | Barley | extracellular, golgi | 80.83 | 83.87 |
| TraesCS1A01G435200.1 | Wheat | endoplasmic reticulum, extracellular | 77.2 | 80.11 |
| OQU88717 | Sorghum | cytosol | 46.63 | 48.91 |
| CDY28045 | Canola | cytosol | 19.69 | 45.24 |
| Bra000299.1-P | Field mustard | cytosol | 16.58 | 44.44 |
| Bra032444.1-P | Field mustard | cytosol | 16.58 | 44.44 |
| CDY06192 | Canola | cytosol | 16.58 | 44.44 |
| CDY09997 | Canola | cytosol | 16.58 | 44.44 |
| Bra030632.1-P | Field mustard | cytosol | 18.65 | 43.9 |
| CDY35936 | Canola | cytosol | 18.65 | 42.86 |
| GSMUA_Achr7P21710_001 | Banana | cytosol | 27.46 | 39.55 |
| PGSC0003DMT400086481 | Potato | cytosol | 16.06 | 34.83 |
| TraesCS5D01G481000.1 | Wheat | extracellular, plastid | 35.23 | 34.17 |
| CDY09996 | Canola | cytosol | 16.06 | 34.07 |
| GSMUA_AchrUn_... | Banana | cytosol | 26.94 | 31.52 |
| VIT_14s0108g01000.t01 | Wine grape | cytosol | 24.35 | 30.13 |
| Solyc12g009630.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 23.32 | 28.85 |
| TraesCS5D01G238700.1 | Wheat | plastid | 23.32 | 25.86 |
| AT3G29000.1 | Thale cress | endoplasmic reticulum | 24.87 | 24.74 |
| KRH40081 | Soybean | cytosol | 25.39 | 23.67 |
| KRH01190 | Soybean | cytosol, nucleus, vacuole | 24.87 | 23.19 |
| AT5G39670.1 | Thale cress | plastid | 23.32 | 22.06 |
| KRH16684 | Soybean | cytosol | 21.24 | 21.24 |
| TraesCS1D01G402400.1 | Wheat | endoplasmic reticulum, extracellular, plasma membrane | 18.13 | 18.92 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G444200.1 | EnsemblPlantsGene:TraesCS1D01G444200 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | ncoils:Coil | PANTHER:PTHR45512 |
| PFAM:PF13499 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 |
| TIGR:cd00051 | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1D:+:487614714..487624759
Molecular Weight (calculated)
21887.6 Da
IEP (calculated)
4.429
GRAVY (calculated)
0.116
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MWAMVMMDQN VLITLVSSLL MLILGPLIID VILVSKKIWS FLHTLTKYLA HDDTLVVDSV VLDDSPASPA KVTGGGGLTS RDIEFVTARL GLTGWRLGLT
101: GWRYQRCEVI GVVNEFMDGK QASESELEEA FYVFDRNEDG FICAGELWNV MRRLGWKEGA MYEDCVRMIR TFDEDGDGKI NFLEFRRMME NAV
101: GWRYQRCEVI GVVNEFMDGK QASESELEEA FYVFDRNEDG FICAGELWNV MRRLGWKEGA MYEDCVRMIR TFDEDGDGKI NFLEFRRMME NAV
001: MDSTELNRVF QMFDKDGDGK ITTKELNESF KNLGIIIPED ELTQIIQKID VNGDGCVDIE EFGELYKTIM VEDEDEVGEE DMKEAFNVFD RNGDGFITVD
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
Arabidopsis Description
CML6Calmodulin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.