CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	EES01631	AT2G41090.1	17360592
AT5G39670.1	EES09201	AT2G41090.1	17360592
AT5G39670.1	EES16322	AT2G41090.1	17360592
AT5G39670.1	OQU78227	AT2G41090.1	17360592
AT5G39670.1	EES01631	AT2G41100.1	17360592
AT5G39670.1	EES09201	AT2G41100.1	17360592
AT5G39670.1	EES16322	AT2G41100.1	17360592
AT5G39670.1	OQU78227	AT2G41100.1	17360592
AT5G39670.1	KXG37587	AT4G14640.1	17360592
AT5G39670.1	KXG37588	AT4G14640.1	17360592
AT5G39670.1	EES01631	AT5G21274.1	17360592
AT5G39670.1	EES09201	AT5G21274.1	17360592
AT5G39670.1	EES16322	AT5G21274.1	17360592
AT5G39670.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G435100.1	Wheat	extracellular	46.74	49.14
TraesCS1B01G470900.1	Wheat	endoplasmic reticulum, golgi	47.28	46.77
TraesCS1D01G444200.1	Wheat	endoplasmic reticulum, golgi	48.91	46.63
TraesCS1A01G435200.1	Wheat	endoplasmic reticulum, extracellular	46.74	46.24
HORVU1Hr1G094160.1	Barley	extracellular	46.74	46.24
HORVU1Hr1G094230.1	Barley	extracellular, golgi	46.2	45.7
TraesCS1B01G471000.1	Wheat	endoplasmic reticulum, golgi	46.2	45.7
Bra000299.1-P	Field mustard	cytosol	16.85	43.06
Bra032444.1-P	Field mustard	cytosol	16.85	43.06
CDY06192	Canola	cytosol	16.85	43.06
CDY09997	Canola	cytosol	16.85	43.06
GSMUA_Achr7P21710_001	Banana	cytosol	29.35	40.3
Bra030632.1-P	Field mustard	cytosol	17.93	40.24
CDY28045	Canola	cytosol	17.93	39.29
CDY35936	Canola	cytosol	17.39	38.1
PGSC0003DMT400086481	Potato	cytosol	16.3	33.71
CDY09996	Canola	cytosol	16.3	32.97
VIT_14s0108g01000.t01	Wine grape	cytosol	24.46	28.85
GSMUA_AchrUn_...	Banana	cytosol	25.54	28.48
OQU90756	Sorghum	endoplasmic reticulum, vacuole	34.78	28.19
AT3G29000.1	Thale cress	endoplasmic reticulum	26.09	24.74
EER98893	Sorghum	plastid	24.46	23.81
Solyc12g009630.1.1	Tomato	endoplasmic reticulum, extracellular, golgi	20.11	23.72
KRH40081	Soybean	cytosol	26.63	23.67
AT5G39670.1	Thale cress	plastid	26.09	23.53
KRH01190	Soybean	cytosol, nucleus, vacuole	25.0	22.22
KRH16684	Soybean	cytosol	21.74	20.73
EES10045	Sorghum	endoplasmic reticulum, plasma membrane	19.02	17.86

Protein Annotations

EnsemblPlants:OQU88717	EnsemblPlantsGene:SORBI_3002G079200	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45512	PFAM:PF13499
PFscan:PS50222	ProteinID:OQU88717	ProteinID:OQU88717.1	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	UniParc:UPI0009DC9364	UniProt:A0A1W0W2W6	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr2:+:8235526..8236128

Molecular Weight (calculated)

19729.5 Da

IEP (calculated)

4.527

GRAVY (calculated)

-0.002

Length

184 amino acids

Sequence
(BLAST)

001: MVNRDFLLSL ASSLPTLVLR PLIADSVSVA GKIVASARAA LEFLARDDTV RSPHSEEPPV VLTCGDAETV TSRLGLPRWT CSGGGGSSSE CRACGAAEVV
101: AEVMAAGVVG GGSERELEEA FHVFDRGEDG FICAAELWAV MRRLGFPEGA RYEDCRRMIR AFDDDGDGRI SLPEFRRMME NAAC

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.