Factsheet for GSMUA_AchrUn_randomP14430_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P04700_001
GSMUA_Achr1P14070_001
GSMUA_Achr1P27230_001
GSMUA_Achr2P01120_001
GSMUA_Achr2P12680_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr3P25390_001
GSMUA_Achr4P22570_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P09010_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr6P24410_001
GSMUA_Achr7P01390_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr10P...	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr11P...	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr2P01120_001	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr3P09330_001	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr3P25040_001	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr5P07820_001	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr5P27590_001	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr6P15990_001	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr6P23670_001	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr8P05790_001	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr9P17280_001	AT2G41090.1	17360592
AT5G39670.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr10P...	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr11P...	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr2P01120_001	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr3P09330_001	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr3P25040_001	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr5P07820_001	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr5P27590_001	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr6P15990_001	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr6P23670_001	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr8P05790_001	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr9P17280_001	AT2G41100.1	17360592
AT5G39670.1	GSMUA_Achr1P04700_001	AT4G14640.1	17360592
AT5G39670.1	GSMUA_Achr1P14070_001	AT4G14640.1	17360592
AT5G39670.1	GSMUA_Achr1P27230_001	AT4G14640.1	17360592
AT5G39670.1	GSMUA_Achr2P12680_001	AT4G14640.1	17360592
AT5G39670.1	GSMUA_Achr3P25390_001	AT4G14640.1	17360592
AT5G39670.1	GSMUA_Achr4P22570_001	AT4G14640.1	17360592
AT5G39670.1	GSMUA_Achr5P09010_001	AT4G14640.1	17360592
AT5G39670.1	GSMUA_Achr6P24410_001	AT4G14640.1	17360592
AT5G39670.1	GSMUA_Achr7P01390_001	AT4G14640.1	17360592
AT5G39670.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr10P...	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr11P...	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr2P01120_001	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr3P09330_001	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr3P25040_001	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr5P07820_001	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr5P27590_001	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr6P15990_001	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr6P23670_001	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr8P05790_001	AT5G21274.1	17360592
AT5G39670.1	GSMUA_Achr9P17280_001	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P21710_001	Banana	cytosol	46.67	57.46
Bra032444.1-P	Field mustard	cytosol	18.18	41.67
CDY06192	Canola	cytosol	18.18	41.67
CDY09997	Canola	cytosol	18.18	41.67
Bra000299.1-P	Field mustard	cytosol	17.58	40.28
Bra030632.1-P	Field mustard	cytosol	20.0	40.24
CDY28045	Canola	cytosol	20.0	39.29
CDY35936	Canola	cytosol	20.0	39.29
CDY09996	Canola	cytosol	17.58	31.87
PGSC0003DMT400086481	Potato	cytosol	16.97	31.46
GSMUA_Achr9P17010_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.48	30.13
VIT_14s0108g01000.t01	Wine grape	cytosol	26.67	28.21
TraesCS1A01G435100.1	Wheat	extracellular	29.7	28.0
TraesCS1A01G435200.1	Wheat	endoplasmic reticulum, extracellular	30.91	27.42
TraesCS1B01G470900.1	Wheat	endoplasmic reticulum, golgi	30.91	27.42
TraesCS1D01G444200.1	Wheat	endoplasmic reticulum, golgi	31.52	26.94
TraesCS1B01G471000.1	Wheat	endoplasmic reticulum, golgi	29.7	26.34
HORVU1Hr1G094230.1	Barley	extracellular, golgi	29.09	25.81
OQU88717	Sorghum	cytosol	28.48	25.54
HORVU1Hr1G094160.1	Barley	extracellular	28.48	25.27
Os03t0812400-01	Rice	endoplasmic reticulum, plastid	30.91	23.94
Solyc12g009630.1.1	Tomato	endoplasmic reticulum, extracellular, golgi	21.21	22.44
TraesCS5D01G481000.1	Wheat	extracellular, plastid	26.67	22.11
TraesCS5B01G480300.1	Wheat	endoplasmic reticulum, plastid	26.67	21.67
TraesCS5A01G467800.1	Wheat	endoplasmic reticulum, plastid	26.06	21.61
GSMUA_Achr2P14950_001	Banana	endoplasmic reticulum	23.64	21.31
AT3G29000.1	Thale cress	endoplasmic reticulum	24.85	21.13
Zm00001d013004_P001	Maize	vacuole	27.88	21.0
Os03t0812800-00	Rice	extracellular	26.67	20.47
AT5G39670.1	Thale cress	plastid	24.85	20.1
HORVU5Hr1G111520.1	Barley	plastid	24.85	19.9
KRH40081	Soybean	cytosol	24.85	19.81
KRH16684	Soybean	cytosol	23.03	19.69
KRH01190	Soybean	cytosol, nucleus, vacuole	24.24	19.32
OQU90756	Sorghum	endoplasmic reticulum, vacuole	26.06	18.94

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP14430_001	EnsemblPlants:GSMUA_AchrUn_randomT14430_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG14430_001	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR45512
PFAM:PF13833	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054	SUPFAM:SSF47473
UniParc:UPI000294D686	UniProt:M0U952	MapMan:35.2	:	:	:

Description

EF hand family protein, putative [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG14430_001]

Coordinates

chrchrUn_random:+:68153637..68154134

Molecular Weight (calculated)

19208.9 Da

IEP (calculated)

4.459

GRAVY (calculated)

-0.602

Length

165 amino acids

Sequence
(BLAST)

001: MSLLIKFVVQ SETSTKEEEE KEEKHNESLP QDAKCKWCNK KGELTYDDIR VVVWRLGMVG RWSNKEVKSG DDSITCEECR AMEGINGLLE DKLASLEELK
101: EAFYVFDRNE DGFISPKELW CVMRRLGLQE GLGLSDCERM IHVFDEDNDG KINFMEFKRL LENTI

Best Arabidopsis Sequence Match ( AT5G39670.1 )
(BLAST)

001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC

Arabidopsis Description

CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.