Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G094230.1 | Barley | extracellular, golgi | 81.72 | 81.72 |
| TraesCS1A01G435100.1 | Wheat | extracellular | 74.19 | 78.86 |
| TraesCS1D01G444200.1 | Wheat | endoplasmic reticulum, golgi | 80.11 | 77.2 |
| OQU88717 | Sorghum | cytosol | 46.24 | 46.74 |
| CDY28045 | Canola | cytosol | 20.43 | 45.24 |
| Bra000299.1-P | Field mustard | cytosol | 17.2 | 44.44 |
| CDY06192 | Canola | cytosol | 16.67 | 43.06 |
| CDY09997 | Canola | cytosol | 16.67 | 43.06 |
| Bra032444.1-P | Field mustard | cytosol | 16.67 | 43.06 |
| CDY35936 | Canola | cytosol | 19.35 | 42.86 |
| Bra030632.1-P | Field mustard | cytosol | 18.82 | 42.68 |
| GSMUA_Achr7P21710_001 | Banana | cytosol | 28.49 | 39.55 |
| PGSC0003DMT400086481 | Potato | cytosol | 17.74 | 37.08 |
| CDY09996 | Canola | cytosol | 16.13 | 32.97 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.42 | 30.91 |
| TraesCS5A01G467800.1 | Wheat | endoplasmic reticulum, plastid | 32.8 | 30.65 |
| VIT_14s0108g01000.t01 | Wine grape | cytosol | 25.27 | 30.13 |
| Solyc12g009630.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 24.73 | 29.49 |
| TraesCS5A01G229000.1 | Wheat | plastid | 27.42 | 28.65 |
| AT3G29000.1 | Thale cress | endoplasmic reticulum | 26.88 | 25.77 |
| KRH40081 | Soybean | cytosol | 26.88 | 24.15 |
| KRH01190 | Soybean | cytosol, nucleus, vacuole | 25.81 | 23.19 |
| AT5G39670.1 | Thale cress | plastid | 24.19 | 22.06 |
| KRH16684 | Soybean | cytosol | 22.58 | 21.76 |
| TraesCS1A01G394100.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, plastid | 18.82 | 18.92 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G435200.1 | EnsemblPlantsGene:TraesCS1A01G435200 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR45512 | PFAM:PF13499 |
| PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 | TIGR:cd00051 | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:585743125..585743685
Molecular Weight (calculated)
20845.4 Da
IEP (calculated)
4.270
GRAVY (calculated)
0.190
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAMVIMDQN IVIALVSSLL MLILRPLIVD IILVSKKIWG FLRTLTKYLV HDGTLAVDSK VLDDSRAPPV QLVGGGELSS GDIEIVTTRL GVTGWRYQGC
101: EGIGVVDELM DGKQASEDEL EEAFYVFDRN EDGFICAGEL WSVMRRLGWK EGAIYEDCVR MIRVFDEDGD GKISFLEFRK MMENVV
101: EGIGVVDELM DGKQASEDEL EEAFYVFDRN EDGFICAGEL WSVMRRLGWK EGAIYEDCVR MIRVFDEDGD GKISFLEFRK MMENVV
001: MDSTELNRVF QMFDKDGDGK ITTKELNESF KNLGIIIPED ELTQIIQKID VNGDGCVDIE EFGELYKTIM VEDEDEVGEE DMKEAFNVFD RNGDGFITVD
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
101: ELKAVLSSLG LKQGKTLEEC RKMIMQVDVD GDGRVNYMEF RQMMKKGRFF SSLS
Arabidopsis Description
CML6Calmodulin-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR02]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.