Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G481000.1 | Wheat | extracellular, plastid | 92.96 | 92.96 |
| TraesCS5B01G480300.1 | Wheat | endoplasmic reticulum, plastid | 85.93 | 84.24 |
| HORVU5Hr1G111520.1 | Barley | plastid | 75.38 | 72.82 |
| Os03t0812400-01 | Rice | endoplasmic reticulum, plastid | 41.21 | 38.5 |
| Os03t0812800-00 | Rice | extracellular | 40.7 | 37.67 |
| Zm00001d013004_P001 | Maize | vacuole | 39.7 | 36.07 |
| TraesCS1A01G435100.1 | Wheat | extracellular | 30.65 | 34.86 |
| OQU90756 | Sorghum | endoplasmic reticulum, vacuole | 37.69 | 33.04 |
| Bra030632.1-P | Field mustard | cytosol | 13.57 | 32.93 |
| TraesCS1A01G435200.1 | Wheat | endoplasmic reticulum, extracellular | 30.65 | 32.8 |
| CDY09997 | Canola | cytosol | 11.56 | 31.94 |
| CDY06192 | Canola | cytosol | 11.56 | 31.94 |
| Bra032444.1-P | Field mustard | cytosol | 11.56 | 31.94 |
| Bra000299.1-P | Field mustard | cytosol | 11.56 | 31.94 |
| GSMUA_Achr7P21710_001 | Banana | cytosol | 21.11 | 31.34 |
| CDY35936 | Canola | cytosol | 13.07 | 30.95 |
| CDY28045 | Canola | cytosol | 13.07 | 30.95 |
| GSMUA_AchrUn_... | Banana | cytosol | 21.61 | 26.06 |
| PGSC0003DMT400086481 | Potato | cytosol | 11.56 | 25.84 |
| VIT_14s0108g01000.t01 | Wine grape | cytosol | 19.6 | 25.0 |
| CDY09996 | Canola | cytosol | 11.06 | 24.18 |
| Solyc12g009630.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 18.09 | 23.08 |
| TraesCS5A01G229000.1 | Wheat | plastid | 19.6 | 21.91 |
| AT3G29000.1 | Thale cress | endoplasmic reticulum | 20.1 | 20.62 |
| AT5G39670.1 | Thale cress | plastid | 18.59 | 18.14 |
| KRH01190 | Soybean | cytosol, nucleus, vacuole | 18.59 | 17.87 |
| KRH40081 | Soybean | cytosol | 18.09 | 17.39 |
| TraesCS1A01G394100.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, plastid | 16.08 | 17.3 |
| KRH16684 | Soybean | cytosol | 14.07 | 14.51 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G467800.1 | EnsemblPlantsGene:TraesCS5A01G467800 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR45003 | PFAM:PF13405 |
| PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 | TIGR:cd00051 |
| TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:645493856..645494750
Molecular Weight (calculated)
20433.4 Da
IEP (calculated)
4.650
GRAVY (calculated)
0.093
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MCQAARVCHN NGMVASVSSL LISLVIKPLA KNAILTGRSI LALLAGDGAG NASAAAAPRG QHCEQCAARD GARLWSSDAA AVMATLGLVP PRRGSDDDDD
101: DGMVVCGGCE AMGVVEEVAW GSKEAGEAEL REAFGVFDRD GDGLVSAAEL WGVLRRLGMT EGARYEDCAR MVAAAAARHG GADGGLGFPE FKAMMEHAV
101: DGMVVCGGCE AMGVVEEVAW GSKEAGEAEL REAFGVFDRD GDGLVSAAEL WGVLRRLGMT EGARYEDCAR MVAAAAARHG GADGGLGFPE FKAMMEHAV
001: MEINNEKKKL SRQSSSFRLR SPSLNALRLH RVFDLFDKNN DGFITVEELS QALSRLGLDA DFSDLKSTVD SFIKPDKTGL RFDDFAALHK TLDESFFGGE
101: GSCCDGSPES DLEEAFNVFD EDGDGFISAV ELQKVLKKLG LPEAGEIEQV EKMIVSVDSN HDGRVDFFEF KNMMQTVVVP S
101: GSCCDGSPES DLEEAFNVFD EDGDGFISAV ELQKVLKKLG LPEAGEIEQV EKMIVSVDSN HDGRVDFFEF KNMMQTVVVP S
Arabidopsis Description
CML43Probable calcium-binding protein CML43 [Source:UniProtKB/Swiss-Prot;Acc:Q9FI19]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.