CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39670.1	EES01631	AT2G41090.1	17360592
AT5G39670.1	EES09201	AT2G41090.1	17360592
AT5G39670.1	EES16322	AT2G41090.1	17360592
AT5G39670.1	OQU78227	AT2G41090.1	17360592
AT5G39670.1	EES01631	AT2G41100.1	17360592
AT5G39670.1	EES09201	AT2G41100.1	17360592
AT5G39670.1	EES16322	AT2G41100.1	17360592
AT5G39670.1	OQU78227	AT2G41100.1	17360592
AT5G39670.1	KXG37587	AT4G14640.1	17360592
AT5G39670.1	KXG37588	AT4G14640.1	17360592
AT5G39670.1	EES01631	AT5G21274.1	17360592
AT5G39670.1	EES09201	AT5G21274.1	17360592
AT5G39670.1	EES16322	AT5G21274.1	17360592
AT5G39670.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013004_P001	Maize	vacuole	51.98	53.88
Os03t0812400-01	Rice	endoplasmic reticulum, plastid	39.65	42.25
Bra032444.1-P	Field mustard	cytosol	12.78	40.28
CDY06192	Canola	cytosol	12.78	40.28
CDY09997	Canola	cytosol	12.78	40.28
Bra030632.1-P	Field mustard	cytosol	14.54	40.24
HORVU5Hr1G111520.1	Barley	plastid	36.12	39.81
TraesCS5D01G481000.1	Wheat	extracellular, plastid	34.36	39.2
TraesCS5B01G480300.1	Wheat	endoplasmic reticulum, plastid	34.8	38.92
Bra000299.1-P	Field mustard	cytosol	12.33	38.89
TraesCS5A01G467800.1	Wheat	endoplasmic reticulum, plastid	33.04	37.69
Os03t0812800-00	Rice	extracellular	35.24	37.21
GSMUA_Achr7P21710_001	Banana	cytosol	21.59	36.57
CDY28045	Canola	cytosol	13.22	35.71
CDY35936	Canola	cytosol	13.22	35.71
OQU88717	Sorghum	cytosol	28.19	34.78
PGSC0003DMT400086481	Potato	cytosol	12.78	32.58
CDY09996	Canola	cytosol	12.33	30.77
EER98893	Sorghum	plastid	22.91	27.51
GSMUA_AchrUn_...	Banana	cytosol	18.94	26.06
Solyc12g009630.1.1	Tomato	endoplasmic reticulum, extracellular, golgi	17.62	25.64
VIT_14s0108g01000.t01	Wine grape	cytosol	16.74	24.36
AT3G29000.1	Thale cress	endoplasmic reticulum	20.7	24.23
AT5G39670.1	Thale cress	plastid	18.94	21.08
KRH40081	Soybean	cytosol	18.5	20.29
KRH01190	Soybean	cytosol, nucleus, vacuole	18.5	20.29
KRH16684	Soybean	cytosol	17.18	20.21
EES10045	Sorghum	endoplasmic reticulum, plasma membrane	16.3	18.88

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.2	EntrezGene:8057392	UniProt:A0A1Z5S4R2	ncoils:Coil	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR002048	EnsemblPlants:OQU90756	ProteinID:OQU90756	ProteinID:OQU90756.1
PFAM:PF13499	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR45512	PANTHER:PTHR45512:SF1	SMART:SM00054
EnsemblPlantsGene:SORBI_3001G040400	SUPFAM:SSF47473	TMHMM:TMhelix	UniParc:UPI0001A829F7	RefSeq:XP_002466219.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:3012491..3013174

Molecular Weight (calculated)

23917.4 Da

IEP (calculated)

4.463

GRAVY (calculated)

0.013

Length

227 amino acids

Sequence
(BLAST)

001: MLEPVLPSVL DLLVHGCLIV SVSSFLIMLA LQPLLPGGNV ATAASRGVCS ASRAVLVRLL SGRSDDGDGD NGGGAMAVAA APPHPRPPPR RGRSRHCCER
101: CAASSWSDVV AAVTASLRLD DENEEEDIAA AAACGGCAAM AAVEDLLERK EATEQELREA FYVFDRDDDG FVGAGELWNV LRRLGMQLPD GAAAREDCCA
201: RMIAAHDADG DGRISFPEFR AMMEHAA

Best Arabidopsis Sequence Match ( AT1G18210.1 )
(BLAST)

001: MASANPETAK PTPATVDMAN PEELKKVFDQ FDSNGDGKIS VLELGGVFKA MGTSYTETEL NRVLEEVDTD RDGYINLDEF STLCRSSSSA AEIRDAFDLY
101: DQDKNGLISA SELHQVLNRL GMSCSVEDCT RMIGPVDADG DGNVNFEEFQ KMMTSSSLLN SNGSAAPPST

Arabidopsis Description

CML27Probable calcium-binding protein CML27 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE22]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.