Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G471000.1 | Wheat | endoplasmic reticulum, golgi | 89.14 | 83.87 |
| TraesCS1B01G470900.1 | Wheat | endoplasmic reticulum, golgi | 88.57 | 83.33 |
| HORVU1Hr1G094160.1 | Barley | extracellular | 82.29 | 77.42 |
| TraesCS1A01G435200.1 | Wheat | endoplasmic reticulum, extracellular | 78.86 | 74.19 |
| OQU88717 | Sorghum | cytosol | 49.14 | 46.74 |
| Bra000299.1-P | Field mustard | cytosol | 17.71 | 43.06 |
| CDY28045 | Canola | cytosol | 20.0 | 41.67 |
| CDY06192 | Canola | cytosol | 16.57 | 40.28 |
| CDY09997 | Canola | cytosol | 16.57 | 40.28 |
| Bra032444.1-P | Field mustard | cytosol | 16.57 | 40.28 |
| Bra030632.1-P | Field mustard | cytosol | 18.86 | 40.24 |
| CDY35936 | Canola | cytosol | 18.86 | 39.29 |
| GSMUA_Achr7P21710_001 | Banana | cytosol | 29.71 | 38.81 |
| PGSC0003DMT400086481 | Potato | cytosol | 16.57 | 32.58 |
| CDY09996 | Canola | cytosol | 16.0 | 30.77 |
| TraesCS5A01G467800.1 | Wheat | endoplasmic reticulum, plastid | 34.86 | 30.65 |
| GSMUA_AchrUn_... | Banana | cytosol | 28.0 | 29.7 |
| VIT_14s0108g01000.t01 | Wine grape | cytosol | 25.71 | 28.85 |
| Solyc12g009630.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 24.57 | 27.56 |
| TraesCS5A01G229000.1 | Wheat | plastid | 26.86 | 26.4 |
| AT3G29000.1 | Thale cress | endoplasmic reticulum | 26.29 | 23.71 |
| KRH40081 | Soybean | cytosol | 27.43 | 23.19 |
| KRH01190 | Soybean | cytosol, nucleus, vacuole | 26.86 | 22.71 |
| KRH16684 | Soybean | cytosol | 22.29 | 20.21 |
| AT5G39670.1 | Thale cress | plastid | 23.43 | 20.1 |
| TraesCS1A01G394100.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, plastid | 18.29 | 17.3 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G435100.1 | EnsemblPlantsGene:TraesCS1A01G435100 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR45512 | PFAM:PF13499 |
| PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SignalP:SignalP-noTM | SMART:SM00054 | SUPFAM:SSF47473 |
| TIGR:cd00051 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:+:585690570..585691306
Molecular Weight (calculated)
19371.4 Da
IEP (calculated)
4.244
GRAVY (calculated)
0.121
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MALVSSLLML ILGPLITDVI LVSKKIWSFL HTLTKYLAHD DTLVVDSVVL DDSPTSLPAK VAGGGGLTSG DIEIVTARLG LTRWRHQGCE GISVVDELMD
101: GKQASEGELE EAFCVFDRDE DGFICAGELW NVMRRLGWTE GAMYEDCVRM IHPFDEDGDG KISFIEFRRM MENAV
101: GKQASEGELE EAFCVFDRDE DGFICAGELW NVMRRLGWTE GAMYEDCVRM IHPFDEDGDG KISFIEFRRM MENAV
001: MASANPETAK PTPATVDMAN PEELKKVFDQ FDSNGDGKIS VLELGGVFKA MGTSYTETEL NRVLEEVDTD RDGYINLDEF STLCRSSSSA AEIRDAFDLY
101: DQDKNGLISA SELHQVLNRL GMSCSVEDCT RMIGPVDADG DGNVNFEEFQ KMMTSSSLLN SNGSAAPPST
101: DQDKNGLISA SELHQVLNRL GMSCSVEDCT RMIGPVDADG DGNVNFEEFQ KMMTSSSLLN SNGSAAPPST
Arabidopsis Description
CML27Probable calcium-binding protein CML27 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE22]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.