Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G471000.1 | Wheat | endoplasmic reticulum, golgi | 96.24 | 96.24 |
| TraesCS1A01G435100.1 | Wheat | extracellular | 83.33 | 88.57 |
| HORVU1Hr1G094160.1 | Barley | extracellular | 80.11 | 80.11 |
| OQU88717 | Sorghum | cytosol | 46.77 | 47.28 |
| Bra000299.1-P | Field mustard | cytosol | 17.74 | 45.83 |
| Bra032444.1-P | Field mustard | cytosol | 16.67 | 43.06 |
| CDY06192 | Canola | cytosol | 16.67 | 43.06 |
| CDY09997 | Canola | cytosol | 16.67 | 43.06 |
| CDY28045 | Canola | cytosol | 19.35 | 42.86 |
| Bra030632.1-P | Field mustard | cytosol | 18.82 | 42.68 |
| GSMUA_Achr7P21710_001 | Banana | cytosol | 30.11 | 41.79 |
| CDY35936 | Canola | cytosol | 18.28 | 40.48 |
| PGSC0003DMT400086481 | Potato | cytosol | 16.13 | 33.71 |
| CDY09996 | Canola | cytosol | 16.13 | 32.97 |
| GSMUA_AchrUn_... | Banana | cytosol | 27.42 | 30.91 |
| TraesCS5B01G480300.1 | Wheat | endoplasmic reticulum, plastid | 33.33 | 30.54 |
| VIT_14s0108g01000.t01 | Wine grape | cytosol | 24.73 | 29.49 |
| Solyc12g009630.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 24.19 | 28.85 |
| KRH40081 | Soybean | cytosol | 26.88 | 24.15 |
| AT3G29000.1 | Thale cress | endoplasmic reticulum | 24.73 | 23.71 |
| KRH01190 | Soybean | cytosol, nucleus, vacuole | 25.81 | 23.19 |
| AT5G39670.1 | Thale cress | plastid | 24.19 | 22.06 |
| KRH16684 | Soybean | cytosol | 22.58 | 21.76 |
| TraesCS5B01G227700.1 | Wheat | plastid | 23.66 | 19.3 |
| TraesCS1B01G422600.1 | Wheat | plastid | 18.28 | 18.38 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G470900.1 | EnsemblPlantsGene:TraesCS1B01G470900 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR45512 | PFAM:PF13499 |
| PFscan:PS50222 | ScanProsite:PS00018 | SMART:SM00054 | SUPFAM:SSF47473 | TIGR:cd00051 | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:+:679174480..679175040
Molecular Weight (calculated)
20898.5 Da
IEP (calculated)
4.344
GRAVY (calculated)
0.161
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MWAMVMMDQN VLIALVSYLL MLILGPLIID VILVSKKIWS FLHTFTKYLA HDDTLVVDSM VLDDSPASPA KVTGGGGLTS RDIEIVTARL GLTGWRYQGC
101: EGISVVDALM DGKQASEGEL KEAFCVFDRD EDGFICPGEL WNVMRRLGWK EGAMYEDCVR MIRPFDEDGD GKISFLEFRR MMENAI
101: EGISVVDALM DGKQASEGEL KEAFCVFDRD EDGFICPGEL WNVMRRLGWK EGAMYEDCVR MIRPFDEDGD GKISFLEFRR MMENAI
001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC
Arabidopsis Description
CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.