Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G238700.1 | Wheat | plastid | 66.23 | 86.78 |
| TraesCS5A01G229000.1 | Wheat | plastid | 67.11 | 85.96 |
| HORVU5Hr1G066260.1 | Barley | plastid | 66.67 | 83.52 |
| EER98893 | Sorghum | plastid | 46.49 | 56.08 |
| Zm00001d005766_P001 | Maize | plastid | 39.91 | 50.56 |
| CDY35936 | Canola | cytosol | 14.04 | 38.1 |
| Bra030632.1-P | Field mustard | cytosol | 13.6 | 37.8 |
| Bra000299.1-P | Field mustard | cytosol | 11.84 | 37.5 |
| Bra032444.1-P | Field mustard | cytosol | 11.84 | 37.5 |
| CDY06192 | Canola | cytosol | 11.84 | 37.5 |
| CDY09997 | Canola | cytosol | 11.84 | 37.5 |
| CDY28045 | Canola | cytosol | 13.6 | 36.9 |
| PGSC0003DMT400086481 | Potato | cytosol | 11.84 | 30.34 |
| GSMUA_Achr9P17010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 19.74 | 28.85 |
| VIT_14s0108g01000.t01 | Wine grape | cytosol | 19.74 | 28.85 |
| CDY09996 | Canola | cytosol | 11.4 | 28.57 |
| AT3G29000.1 | Thale cress | endoplasmic reticulum | 22.81 | 26.8 |
| TraesCS1B01G471000.1 | Wheat | endoplasmic reticulum, golgi | 19.74 | 24.19 |
| TraesCS1B01G422600.1 | Wheat | plastid | 19.3 | 23.78 |
| TraesCS1B01G470900.1 | Wheat | endoplasmic reticulum, golgi | 19.3 | 23.66 |
| AT5G39670.1 | Thale cress | plastid | 20.18 | 22.55 |
| KRH40081 | Soybean | cytosol | 19.74 | 21.74 |
| KRH01190 | Soybean | cytosol, nucleus, vacuole | 19.3 | 21.26 |
| TraesCS5B01G480300.1 | Wheat | endoplasmic reticulum, plastid | 18.42 | 20.69 |
| Solyc12g009630.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 14.04 | 20.51 |
| KRH16684 | Soybean | cytosol | 17.11 | 20.21 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G227700.1 | EnsemblPlantsGene:TraesCS5B01G227700 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR45512 | PFAM:PF13499 |
| PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 | TIGR:cd00051 |
| TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:404183373..404184059
Molecular Weight (calculated)
24057.0 Da
IEP (calculated)
4.389
GRAVY (calculated)
-0.119
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MPNLGALQIA SSTQRPARIL ISEASKKHQG NKSRGSRQRK AQTEDIDMDM AASSSAPGAS YFIFNFSVAP AVVVISINVI LVWLSALVKS SSSSSSSSST
101: SRRSAAPAPE QEPAQPAPAS GASEVDLDVV LGVMGAGSAA SIGFEEAAIL FEDDEATVEE AAAAFRVFDR NGDGFVDAGE LRSVLRSLGF TAGVAAAECQ
201: RMIDAYDENK DSRMDFQEFL NFMERSSS
101: SRRSAAPAPE QEPAQPAPAS GASEVDLDVV LGVMGAGSAA SIGFEEAAIL FEDDEATVEE AAAAFRVFDR NGDGFVDAGE LRSVLRSLGF TAGVAAAECQ
201: RMIDAYDENK DSRMDFQEFL NFMERSSS
001: MEDSSLLSPI SLLTIVIFLF ILNLMMIIQD FSSSFPFRFH LFFSNAYILF TSIRNNKQNT ELPIIKKVVV PNRADIKTSV EEVKAIIDDS EALYECLIEE
101: GEEYLLEKNE MMGKEIVKEA FRLFDENQDG FIDENELKHV LSLLGYDECT KMECRKMVKV YDENRDGKID FYEFVKLIEK SFS
101: GEEYLLEKNE MMGKEIVKEA FRLFDENQDG FIDENELKHV LSLLGYDECT KMECRKMVKV YDENRDGKID FYEFVKLIEK SFS
Arabidopsis Description
CML47Probable calcium-binding protein CML47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN89]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.