Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plasma membrane 4
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000299.1-P | Field mustard | cytosol | 21.15 | 45.83 |
| Bra032444.1-P | Field mustard | cytosol | 19.87 | 43.06 |
| CDY06192 | Canola | cytosol | 19.87 | 43.06 |
| CDY09997 | Canola | cytosol | 19.87 | 43.06 |
| Bra030632.1-P | Field mustard | cytosol | 21.79 | 41.46 |
| CDY28045 | Canola | cytosol | 21.79 | 40.48 |
| CDY35936 | Canola | cytosol | 21.79 | 40.48 |
| GSMUA_Achr7P21710_001 | Banana | cytosol | 32.69 | 38.06 |
| CDY09996 | Canola | cytosol | 19.23 | 32.97 |
| PGSC0003DMT400086481 | Potato | cytosol | 17.95 | 31.46 |
| GSMUA_AchrUn_... | Banana | cytosol | 30.13 | 28.48 |
| TraesCS5A01G229000.1 | Wheat | plastid | 31.41 | 27.53 |
| TraesCS5D01G238700.1 | Wheat | plastid | 30.13 | 27.01 |
| VIT_14s0108g01000.t01 | Wine grape | cytosol | 26.92 | 26.92 |
| Solyc12g009630.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 26.28 | 26.28 |
| GSMUA_Achr2P14950_001 | Banana | endoplasmic reticulum | 30.77 | 26.23 |
| AT3G29000.1 | Thale cress | endoplasmic reticulum | 32.05 | 25.77 |
| Zm00001d005766_P001 | Maize | plastid | 28.85 | 25.0 |
| HORVU5Hr1G066260.1 | Barley | plastid | 28.21 | 24.18 |
| KRH40081 | Soybean | cytosol | 32.05 | 24.15 |
| EER98893 | Sorghum | plastid | 28.85 | 23.81 |
| KRH01190 | Soybean | cytosol, nucleus, vacuole | 31.41 | 23.67 |
| AT5G39670.1 | Thale cress | plastid | 30.13 | 23.04 |
| KRH16684 | Soybean | cytosol | 25.64 | 20.73 |
| TraesCS5B01G227700.1 | Wheat | plastid | 28.85 | 19.74 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P17010_001 | EnsemblPlants:GSMUA_Achr9T17010_001 | EnsemblPlantsGene:GSMUA_Achr9G17010_001 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005509 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | ncoils:Coil |
| PANTHER:PTHR45512 | PFAM:PF13833 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 |
| SUPFAM:SSF47473 | UniParc:UPI00029495C1 | UniProt:M0U108 | MapMan:35.2 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G17010_001]
Coordinates
chr9:-:11561446..11561916
Molecular Weight (calculated)
17721.9 Da
IEP (calculated)
4.052
GRAVY (calculated)
-0.349
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MEYLLHHLTR LFEMLHCHLE RLGYLAITQV DSIPSNELIV SGDESSDDAA MVMKRLGLWS SDDDEETESS RLMDAAYKLL EEKEARLEEV DAAFGVFDED
101: GDGLIGAEEL RAVMRRLGLE EGMRLEDCRR MIEAYDEDGD GHVSLSEFKN MLECAL
101: GDGLIGAEEL RAVMRRLGLE EGMRLEDCRR MIEAYDEDGD GHVSLSEFKN MLECAL
001: MTENQLYSFI TMKSSLSKCK QSSSLSFPLF GLINFFLIGF FRWVSFAQLF FSRFWPLVQH QQCVSEKKSK DLEFQTSIKH EEYRDDDDDG LCREDVGMVM
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC
101: KSLGLSTDQE NEGLQKQYSS KEVSNLFEEK EPSLEEVKQA FDVFDENRDG FIDPIDLQRV LTILGLKQGS NLENCRRMIR SFDGSKDGRI DFYGFVKFME
201: NNFC
Arabidopsis Description
CML46Probable calcium-binding protein CML45 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z27]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.