Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G39670.1 | HORVU0Hr1G001280.1 | AT2G41090.1 | 17360592 |
| AT5G39670.1 | HORVU2Hr1G016740.4 | AT2G41090.1 | 17360592 |
| AT5G39670.1 | HORVU3Hr1G038010.1 | AT2G41090.1 | 17360592 |
| AT5G39670.1 | HORVU3Hr1G079210.4 | AT2G41090.1 | 17360592 |
| AT5G39670.1 | HORVU4Hr1G026290.3 | AT2G41090.1 | 17360592 |
| AT5G39670.1 | HORVU5Hr1G014060.1 | AT2G41090.1 | 17360592 |
| AT5G39670.1 | HORVU5Hr1G014070.2 | AT2G41090.1 | 17360592 |
| AT5G39670.1 | HORVU5Hr1G044710.4 | AT2G41090.1 | 17360592 |
| AT5G39670.1 | HORVU0Hr1G001280.1 | AT2G41100.1 | 17360592 |
| AT5G39670.1 | HORVU2Hr1G016740.4 | AT2G41100.1 | 17360592 |
| AT5G39670.1 | HORVU3Hr1G038010.1 | AT2G41100.1 | 17360592 |
| AT5G39670.1 | HORVU3Hr1G079210.4 | AT2G41100.1 | 17360592 |
| AT5G39670.1 | HORVU4Hr1G026290.3 | AT2G41100.1 | 17360592 |
| AT5G39670.1 | HORVU5Hr1G014060.1 | AT2G41100.1 | 17360592 |
| AT5G39670.1 | HORVU5Hr1G014070.2 | AT2G41100.1 | 17360592 |
| AT5G39670.1 | HORVU5Hr1G044710.4 | AT2G41100.1 | 17360592 |
| AT5G39670.1 | HORVU0Hr1G001280.1 | AT5G21274.1 | 17360592 |
| AT5G39670.1 | HORVU2Hr1G016740.4 | AT5G21274.1 | 17360592 |
| AT5G39670.1 | HORVU3Hr1G038010.1 | AT5G21274.1 | 17360592 |
| AT5G39670.1 | HORVU3Hr1G079210.4 | AT5G21274.1 | 17360592 |
| AT5G39670.1 | HORVU4Hr1G026290.3 | AT5G21274.1 | 17360592 |
| AT5G39670.1 | HORVU5Hr1G014060.1 | AT5G21274.1 | 17360592 |
| AT5G39670.1 | HORVU5Hr1G014070.2 | AT5G21274.1 | 17360592 |
| AT5G39670.1 | HORVU5Hr1G044710.4 | AT5G21274.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G238700.1 | Wheat | plastid | 80.22 | 83.91 |
| TraesCS5A01G229000.1 | Wheat | plastid | 79.67 | 81.46 |
| TraesCS5B01G227700.1 | Wheat | plastid | 83.52 | 66.67 |
| EER98893 | Sorghum | plastid | 58.79 | 56.61 |
| Zm00001d005766_P001 | Maize | plastid | 51.65 | 52.22 |
| Bra030632.1-P | Field mustard | cytosol | 18.13 | 40.24 |
| Bra000299.1-P | Field mustard | cytosol | 15.38 | 38.89 |
| Bra032444.1-P | Field mustard | cytosol | 15.38 | 38.89 |
| CDY06192 | Canola | cytosol | 15.38 | 38.89 |
| CDY09997 | Canola | cytosol | 15.38 | 38.89 |
| CDY35936 | Canola | cytosol | 16.48 | 35.71 |
| CDY28045 | Canola | cytosol | 16.48 | 35.71 |
| VIT_14s0108g01000.t01 | Wine grape | cytosol | 27.47 | 32.05 |
| PGSC0003DMT400086481 | Potato | cytosol | 15.38 | 31.46 |
| CDY09996 | Canola | cytosol | 14.84 | 29.67 |
| GSMUA_Achr9P17010_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 24.18 | 28.21 |
| AT3G29000.1 | Thale cress | endoplasmic reticulum | 29.67 | 27.84 |
| HORVU1Hr1G094160.1 | Barley | extracellular | 25.82 | 25.27 |
| HORVU1Hr1G094230.1 | Barley | extracellular, golgi | 25.82 | 25.27 |
| AT5G39670.1 | Thale cress | plastid | 26.92 | 24.02 |
| KRH01190 | Soybean | cytosol, nucleus, vacuole | 26.37 | 23.19 |
| KRH40081 | Soybean | cytosol | 25.82 | 22.71 |
| HORVU1Hr1G086900.1 | Barley | endoplasmic reticulum, vacuole | 23.63 | 21.83 |
| Solyc12g009630.1.1 | Tomato | endoplasmic reticulum, extracellular, golgi | 18.68 | 21.79 |
| KRH16684 | Soybean | cytosol | 23.08 | 21.76 |
| HORVU5Hr1G111520.1 | Barley | plastid | 20.88 | 18.45 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.2 | EMBL:AK357231 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| UniProt:F2D024 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | EnsemblPlantsGene:HORVU5Hr1G066260 | EnsemblPlants:HORVU5Hr1G066260.1 | InterPro:IPR002048 | PFAM:PF13499 | ScanProsite:PS00018 |
| PFscan:PS50222 | PANTHER:PTHR45512 | SMART:SM00054 | SUPFAM:SSF47473 | TMHMM:TMhelix | UniParc:UPI00020055CB |
| SEG:seg | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D024]
Coordinates
chrchr5H:+:505772371..505773563
Molecular Weight (calculated)
18668.5 Da
IEP (calculated)
3.681
GRAVY (calculated)
0.176
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMEMAASSS APGASYFSFN FSVAQAVVTI SINVVVVWLS ALVKSSSSSS SSSASSRSPA PAPEPEPAQP AAASGASEVD LDVVLGVMGA AGAASVGFEE
101: AAALFEEEEA TVEEAAAAFR VFDCNGDGFV DAGELGSVLR SLGFTAGVAA AECQRMIDAY DENKDGRMDF QEFLSFMERS SS
101: AAALFEEEEA TVEEAAAAFR VFDCNGDGFV DAGELGSVLR SLGFTAGVAA AECQRMIDAY DENKDGRMDF QEFLSFMERS SS
001: MEDSSLLSPI SLLTIVIFLF ILNLMMIIQD FSSSFPFRFH LFFSNAYILF TSIRNNKQNT ELPIIKKVVV PNRADIKTSV EEVKAIIDDS EALYECLIEE
101: GEEYLLEKNE MMGKEIVKEA FRLFDENQDG FIDENELKHV LSLLGYDECT KMECRKMVKV YDENRDGKID FYEFVKLIEK SFS
101: GEEYLLEKNE MMGKEIVKEA FRLFDENQDG FIDENELKHV LSLLGYDECT KMECRKMVKV YDENRDGKID FYEFVKLIEK SFS
Arabidopsis Description
CML47Probable calcium-binding protein CML47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN89]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.