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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 9
  • golgi 5
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, secretory
BaCelLo:secretory
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os03t0743500-02
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 Os01t0267900-01 AT2G41090.1 17360592
AT4G02410.1 Os01t0279300-01 AT2G41090.1 17360592
AT4G02410.1 Os01t0810300-01 AT2G41090.1 17360592
AT4G02410.1 Os03t0319300-01 AT2G41090.1 17360592
AT4G02410.1 Os05t0491000-01 AT2G41090.1 17360592
AT4G02410.1 Os05t0491100-01 AT2G41090.1 17360592
AT4G02410.1 Os07t0687200-02 AT2G41090.1 17360592
AT4G02410.1 Os12t0603800-00 AT2G41090.1 17360592
AT4G02410.1 Os01t0267900-01 AT2G41100.1 17360592
AT4G02410.1 Os01t0279300-01 AT2G41100.1 17360592
AT4G02410.1 Os01t0810300-01 AT2G41100.1 17360592
AT4G02410.1 Os03t0319300-01 AT2G41100.1 17360592
AT4G02410.1 Os05t0491000-01 AT2G41100.1 17360592
AT4G02410.1 Os05t0491100-01 AT2G41100.1 17360592
AT4G02410.1 Os07t0687200-02 AT2G41100.1 17360592
AT4G02410.1 Os12t0603800-00 AT2G41100.1 17360592
AT4G02410.1 Os03t0743500-02 AT4G14640.1 17360592
AT4G02410.1 Os01t0267900-01 AT5G21274.1 17360592
AT4G02410.1 Os01t0279300-01 AT5G21274.1 17360592
AT4G02410.1 Os01t0810300-01 AT5G21274.1 17360592
AT4G02410.1 Os03t0319300-01 AT5G21274.1 17360592
AT4G02410.1 Os05t0491000-01 AT5G21274.1 17360592
AT4G02410.1 Os05t0491100-01 AT5G21274.1 17360592
AT4G02410.1 Os07t0687200-02 AT5G21274.1 17360592
AT4G02410.1 Os12t0603800-00 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G236300.1 Wheat plasma membrane 67.8 76.94
TraesCS6D01G219000.1 Wheat plasma membrane 76.11 76.91
TraesCS6B01G265000.1 Wheat plasma membrane 76.11 76.91
EES07549 Sorghum cytosol, plasma membrane, plastid 73.89 76.15
Os04t0531400-01 Rice plasma membrane 63.65 67.45
Os03t0772600-01 Rice plasma membrane 42.43 60.85
Os07t0130200-01 Rice plasma membrane 58.16 56.98
Os07t0130100-01 Rice plasma membrane 57.42 56.83
Os07t0575600-02 Rice plasma membrane 58.61 56.67
Os07t0283125-00 Rice plasma membrane 56.23 56.65
Os10t0441900-01 Rice plasma membrane 57.57 56.15
Os10t0442000-01 Rice plasma membrane 57.86 55.16
Os04t0531500-01 Rice plasma membrane 58.9 53.94
CDX91325 Canola cytosol, mitochondrion 21.07 53.79
Os09t0268000-00 Rice plasma membrane 53.26 53.74
Os07t0130400-01 Rice plasma membrane 55.19 53.6
Os07t0283050-00 Rice plasma membrane 53.12 53.51
KRH49145 Soybean plasma membrane 52.67 53.22
Os07t0131500-00 Rice plasma membrane 49.7 52.67
KRH00016 Soybean plasma membrane 52.08 52.62
VIT_08s0007g00810.t01 Wine grape plasma membrane 52.23 51.76
PGSC0003DMT400022983 Potato plasma membrane 51.04 51.73
Os07t0130800-01 Rice plasma membrane 53.56 51.57
CDX91384 Canola plasma membrane 51.04 51.11
Bra005168.1-P Field mustard plasma membrane 51.04 51.11
AT2G37710.1 Thale cress plasma membrane 51.19 51.11
Solyc09g011990.1.1 Tomato plasma membrane 50.0 50.45
Solyc09g012000.1.1 Tomato plasma membrane 49.85 50.22
CDY55369 Canola plasma membrane 49.26 49.55
PGSC0003DMT400022743 Potato plasma membrane 48.96 49.4
AT3G53810.1 Thale cress plasma membrane 49.55 49.34
CDY65835 Canola plasma membrane 47.92 49.01
PGSC0003DMT400052365 Potato plasma membrane 48.37 48.95
Bra018553.1-P Field mustard plasma membrane 48.37 48.88
AT4G02420.1 Thale cress plasma membrane 48.37 48.73
CDY21254 Canola plasma membrane 47.03 48.69
CDY02414 Canola plasma membrane 42.28 48.31
CDX90939 Canola plasma membrane 47.33 48.26
Bra000881.1-P Field mustard plasma membrane 48.22 48.15
Bra035326.1-P Field mustard plasma membrane 47.92 48.14
AT4G02410.1 Thale cress plasma membrane 48.07 48.07
Os02t0299000-00 Rice mitochondrion 41.84 47.72
Os09t0268100-00 Rice plasma membrane 33.98 47.31
Os02t0298200-01 Rice plasma membrane 41.39 47.21
Os03t0823000-01 Rice plasma membrane 46.59 44.79
Bra000880.1-P Field mustard plasma membrane 45.1 44.77
Os07t0575750-00 Rice plasma membrane 45.85 44.65
Os12t0574700-00 Rice plasma membrane 45.25 44.46
Os07t0129800-00 Rice plasma membrane, vacuole 54.6 43.45
Os10t0533800-00 Rice plasma membrane 44.21 42.69
Solyc09g011060.2.1 Tomato plasma membrane 48.52 39.3
Os07t0131375-00 Rice plasma membrane 32.49 36.38
GSMUA_Achr9P09920_001 Banana plasma membrane 41.84 29.75
GSMUA_Achr9P10000_001 Banana cytosol 41.84 14.71
Os07t0575700-01 Rice plasma membrane 8.16 8.2
Os07t0129900-00 Rice plasma membrane 0.15 0.15
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20EntrezGene:4330111EMBL:AK107491
ProteinID:BAD25367.1ProteinID:BAF09461.1ProteinID:BAS79982.1InterPro:ConA-like_dom_sfGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006464
GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0019538GO:GO:0030246InterPro:IPR000719
InterPro:Kinase-like_dom_sfInterPro:Lectin_legB_Mn/Ca_BSInterPro:Legume_lectin_domEnsemblPlantsGene:Os02g0640500EnsemblPlants:Os02t0640500-01PFAM:PF00069
PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108ScanProsite:PS00307PFscan:PS50011PANTHER:PTHR27007
PANTHER:PTHR27007:SF3InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSUniProt:Q6H7D2SMART:SM00220SUPFAM:SSF49899
SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00003B4443RefSeq:XP_015624170.1
SEG:seg:::::
Description
Salt Intolerance 1Lectin receptor-like kinase, Mediation of salt sensitivity, Regulation of ethylene homeostasis (Os02t0640500-01)
Coordinates
chr2:-:25723956..25726080
Molecular Weight (calculated)
73244.3 Da
IEP (calculated)
7.044
GRAVY (calculated)
0.130
Length
674 amino acids
Sequence
(BLAST)
001: MRRPELIMRS LPLILFLSLG SFHLAAAAVD DQFTFDGFAG VNLTLDGTAV VTPGGLLMLT NGTTLLKGHA FYPSPLRFFH EATSGGGSST VRSFSTAFVF
101: GIVSEYADLS SPGLAFVVAK SRDFSSALQS QYMGLANARN NGNASNHFLA VELDTIVNAE FGDMSDNHVG IDVDGLASAA ADDAGYHDDR TGAFVNMSLL
201: SRAAARVWVD FDARTSLVNV TMAPLELPKP TTPLLSAAVN LSAVIEDEAY VGFSSSTGVV ASRHYVLAWS FKMDGPAPSL NVSKLPALPV TIARAPSNVL
301: KILLPIASAA LVSALAIAVL VIHRRRRRYA ELKEEWEVAF GPHRFSYKDL FRATNGFSDE RLLGFGGFGR VYKGVLLVSR VEIAVKKVSH ESRQGMKEFI
401: AEVVSIGQLR HRNLVQLLGY CRQKGELLLV YDYMPNGSLD KYLYAENSKI LSWAQRFRII KGIASSILYL HEDWEQVVLH RDIKASNVLL DAEMNCRLGD
501: FGLARLYDRG TDPHTTHVVG TIGYLAPELG HTGRPSKASD IFAFGVFMLE VTCGRRPVLQ DTNGGQLLLV DMVLEHWRQG TVTDAVDPRL QGDFAVEEAS
601: LVLKLCLLCS HPLPSARPGI RQVVQLLDGA MPLPELSQAH LSCNMLALMQ NQMGNSCSVA SSVAGNISDI PRAR
Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)
001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR
Arabidopsis Description
LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.