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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 10
  • golgi 5
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:secretory
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:cytosol, extracellular, nucleus, plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 18260611
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os03t0743500-02
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 Os01t0267900-01 AT2G41090.1 17360592
AT4G02410.1 Os01t0279300-01 AT2G41090.1 17360592
AT4G02410.1 Os01t0810300-01 AT2G41090.1 17360592
AT4G02410.1 Os03t0319300-01 AT2G41090.1 17360592
AT4G02410.1 Os05t0491000-01 AT2G41090.1 17360592
AT4G02410.1 Os05t0491100-01 AT2G41090.1 17360592
AT4G02410.1 Os07t0687200-02 AT2G41090.1 17360592
AT4G02410.1 Os12t0603800-00 AT2G41090.1 17360592
AT4G02410.1 Os01t0267900-01 AT2G41100.1 17360592
AT4G02410.1 Os01t0279300-01 AT2G41100.1 17360592
AT4G02410.1 Os01t0810300-01 AT2G41100.1 17360592
AT4G02410.1 Os03t0319300-01 AT2G41100.1 17360592
AT4G02410.1 Os05t0491000-01 AT2G41100.1 17360592
AT4G02410.1 Os05t0491100-01 AT2G41100.1 17360592
AT4G02410.1 Os07t0687200-02 AT2G41100.1 17360592
AT4G02410.1 Os12t0603800-00 AT2G41100.1 17360592
AT4G02410.1 Os03t0743500-02 AT4G14640.1 17360592
AT4G02410.1 Os01t0267900-01 AT5G21274.1 17360592
AT4G02410.1 Os01t0279300-01 AT5G21274.1 17360592
AT4G02410.1 Os01t0810300-01 AT5G21274.1 17360592
AT4G02410.1 Os03t0319300-01 AT5G21274.1 17360592
AT4G02410.1 Os05t0491000-01 AT5G21274.1 17360592
AT4G02410.1 Os05t0491100-01 AT5G21274.1 17360592
AT4G02410.1 Os07t0687200-02 AT5G21274.1 17360592
AT4G02410.1 Os12t0603800-00 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G191400.1 Wheat plasma membrane 75.0 76.67
OQU76281 Sorghum plasma membrane 75.73 75.73
HORVU6Hr1G053090.1 Barley cytosol, plasma membrane 73.4 71.33
Os03t0772600-01 Rice plasma membrane 44.77 65.53
Os07t0130400-01 Rice plasma membrane 64.39 63.83
Os07t0283125-00 Rice plasma membrane 62.06 63.83
Os07t0130100-01 Rice plasma membrane 60.9 61.53
Os04t0531400-01 Rice plasma membrane 55.23 59.75
Os07t0575600-02 Rice plasma membrane 59.74 58.97
Os07t0283050-00 Rice plasma membrane 57.27 58.89
Os02t0640500-01 Rice plasma membrane 56.98 58.16
Os10t0441900-01 Rice plasma membrane 57.85 57.6
Os04t0531500-01 Rice plasma membrane 61.19 57.2
Os09t0268000-00 Rice plasma membrane 55.38 57.04
Os07t0131500-00 Rice plasma membrane 52.62 56.92
Os10t0442000-01 Rice plasma membrane 58.43 56.86
Os07t0130800-01 Rice plasma membrane 57.85 56.86
KRH00016 Soybean plasma membrane 52.91 54.57
KRH49145 Soybean plasma membrane 52.47 54.12
Solyc09g011990.1.1 Tomato plasma membrane 51.89 53.44
PGSC0003DMT400052365 Potato plasma membrane 51.31 53.0
Os09t0268100-00 Rice plasma membrane 37.21 52.89
AT2G37710.1 Thale cress plasma membrane 51.89 52.89
VIT_08s0007g00810.t01 Wine grape plasma membrane 52.18 52.79
PGSC0003DMT400022983 Potato plasma membrane 50.87 52.63
Bra005168.1-P Field mustard plasma membrane 51.45 52.6
CDX91384 Canola plasma membrane 51.31 52.45
CDX91325 Canola cytosol, mitochondrion 20.06 52.27
Solyc09g012000.1.1 Tomato plasma membrane 50.44 51.87
AT3G53810.1 Thale cress plasma membrane 51.02 51.85
PGSC0003DMT400022743 Potato plasma membrane 50.0 51.5
CDY21254 Canola plasma membrane 48.69 51.46
CDY65835 Canola plasma membrane 48.84 50.99
Bra035326.1-P Field mustard plasma membrane 48.98 50.22
Os02t0298200-01 Rice plasma membrane 42.73 49.75
Os02t0299000-00 Rice mitochondrion 42.73 49.75
CDY02414 Canola plasma membrane 42.59 49.66
Bra000881.1-P Field mustard plasma membrane 48.55 49.48
CDY55369 Canola plasma membrane 48.11 49.4
AT4G02420.1 Thale cress plasma membrane 47.97 49.33
Bra018553.1-P Field mustard plasma membrane 47.82 49.33
CDX90939 Canola plasma membrane 47.09 49.02
AT4G02410.1 Thale cress plasma membrane 47.97 48.96
Os07t0575750-00 Rice plasma membrane 47.24 46.97
Os07t0129800-00 Rice plasma membrane, vacuole 57.12 46.4
Bra000880.1-P Field mustard plasma membrane 44.77 45.36
Os12t0574700-00 Rice plasma membrane 44.62 44.75
Os03t0823000-01 Rice plasma membrane 45.06 44.22
Os10t0533800-00 Rice plasma membrane 43.46 42.84
Solyc09g011060.2.1 Tomato plasma membrane 50.15 41.47
Os07t0131375-00 Rice plasma membrane 32.85 37.54
GSMUA_Achr9P09920_001 Banana plasma membrane 40.7 29.54
GSMUA_Achr9P10000_001 Banana cytosol 41.72 14.97
Os07t0575700-01 Rice plasma membrane 7.99 8.2
Os07t0129900-00 Rice plasma membrane 0.15 0.15
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20ProteinID:BAC84735.1ProteinID:BAF20735.2
ProteinID:BAS99921.1InterPro:ConA-like_dom_sfGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672
GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006464GO:GO:0006468GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016310
GO:GO:0016740GO:GO:0019538GO:GO:0030246InterPro:IPR000719InterPro:Kinase-like_dom_sfInterPro:Legume_lectin_dom
EnsemblPlantsGene:Os07g0130200EnsemblPlants:Os07t0130200-01PFAM:PF00069PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108
PFscan:PS50011PANTHER:PTHR27007PANTHER:PTHR27007:SF41InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSUniProt:Q6YT57
SMART:SM00220SUPFAM:SSF49899SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI00001BF7C5SEG:seg::::
Description
Similar to Resistance protein candidate (Fragment). (Os07t0130200-01)
Coordinates
chr7:-:1595360..1597594
Molecular Weight (calculated)
74899.9 Da
IEP (calculated)
6.691
GRAVY (calculated)
0.051
Length
688 amino acids
Sequence
(BLAST)
001: MKLISIYLLV LCVVGANELL VVAASGNDGG GGRFVYSGFA GANLTLDGTA TVTPAGLLEL TNGTLQLKGH AFHPTPLRFG FGSGGGGGGD GVVVRSFSAS
101: FVFGILSAYP DMSAHGIVFL VSPTTDFSAA LASQYLGLVN VTSNGDARNR IFAVELDTLQ QDEFRDINDN HVGVDINGLV SLQSTSAGYY AADINGGGFR
201: NLTLISHEAM RVWVDYDAGD ARIDVTLAPL AVAKPVRPLI SAAYNLSSVI TDTAYVGFSS ATGSFNSRHY VLGWSFAVDG GPAPAIDVAK LPKLPREGPK
301: ARSKFLEIFL PIASAAVVLA MGILVILLVR RRKRYTELRE DWEVEFGPHR FPYKDLHHAT QGFESKCLLG VGGFGRVYKG VLPNSNVEIA VKRVSHDSSQ
401: GVKEFVAEVV SLGRLQHCNL VRLLGYCRRK GELMLVYEYM SNGSLDKYLH GQDNKPTLSW AQRFQIIKDI ASGLLYLHEE CDKVVIHRDI KASNVLLDNE
501: MNARLGDFGL ARLYDHGEDP QSTHVVGTIG YLAPELGRTS KATPLTDVFA FGTFILEVTC GRRPIYHDSH GTQVMLVDWV LDHWHKQSLV DTVDLKLHGE
601: FDVGEACLVL KLGLLCSHPF INARPDMRRV MQYLKREVAL PELMPTSMSF HMLALMQNDG FDSYVQSYPS SNSKGNISTA TSSLLEEG
Best Arabidopsis Sequence Match ( AT3G53810.1 )
(BLAST)
001: MFVKLKLIFF FFLLCQIMIS SSQNLNFTYN GFHPPLTDIS LQGLATVTPN GLLKLTNTSV QKTGHAFCTE RIRFKDSQNG NVSSFSTTFV FAIHSQIPTL
101: SGHGIAFVVA PTLGLPFALP SQYIGLFNIS NNGNDTNHIF AVEFDTIQSS EFGDPNDNHV GIDLNGLRSA NYSTAGYRDD HDKFQNLSLI SRKRIQVWID
201: YDNRSHRIDV TVAPFDSDKP RKPLVSYVRD LSSILLEDMY VGFSSATGSV LSEHFLVGWS FRLNGEAPML SLSKLPKLPR FEPRRISEFY KIGMPLISLS
301: LIFSIIFLAF YIVRRKKKYE EELDDWETEF GKNRFRFKEL YHATKGFKEK DLLGSGGFGR VYRGILPTTK LEVAVKRVSH DSKQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNNPETT LDWKQRSTII KGVASGLFYL HEEWEQVVIH RDVKASNVLL DADFNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHS RTGRATTTTD VYAFGAFLLE VVSGRRPIEF HSASDDTFLL VEWVFSLWLR GNIMEAKDPK LGSSGYDLEE VEMVLKLGLL
601: CSHSDPRARP SMRQVLQYLR GDMALPELTP LDLSAGSVMN LGGRDGFSGI AMTDFSTVFK GFTGGSSIAD SLLSGGR
Arabidopsis Description
LECRK42L-type lectin-domain containing receptor kinase IV.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M345]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.