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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 2
  • plasma membrane 7
  • extracellular 3
  • cytosol 1
  • endoplasmic reticulum 2
  • vacuole 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
EpiLoc:plasma membrane
MultiLoc:plasma membrane
Plant-mPloc:cytosol, extracellular, nucleus, plasma membrane
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 18260611
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os03t0743500-02
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 Os01t0267900-01 AT2G41090.1 17360592
AT4G02410.1 Os01t0279300-01 AT2G41090.1 17360592
AT4G02410.1 Os01t0810300-01 AT2G41090.1 17360592
AT4G02410.1 Os03t0319300-01 AT2G41090.1 17360592
AT4G02410.1 Os05t0491000-01 AT2G41090.1 17360592
AT4G02410.1 Os05t0491100-01 AT2G41090.1 17360592
AT4G02410.1 Os07t0687200-02 AT2G41090.1 17360592
AT4G02410.1 Os12t0603800-00 AT2G41090.1 17360592
AT4G02410.1 Os01t0267900-01 AT2G41100.1 17360592
AT4G02410.1 Os01t0279300-01 AT2G41100.1 17360592
AT4G02410.1 Os01t0810300-01 AT2G41100.1 17360592
AT4G02410.1 Os03t0319300-01 AT2G41100.1 17360592
AT4G02410.1 Os05t0491000-01 AT2G41100.1 17360592
AT4G02410.1 Os05t0491100-01 AT2G41100.1 17360592
AT4G02410.1 Os07t0687200-02 AT2G41100.1 17360592
AT4G02410.1 Os12t0603800-00 AT2G41100.1 17360592
AT4G02410.1 Os03t0743500-02 AT4G14640.1 17360592
AT4G02410.1 Os01t0267900-01 AT5G21274.1 17360592
AT4G02410.1 Os01t0279300-01 AT5G21274.1 17360592
AT4G02410.1 Os01t0810300-01 AT5G21274.1 17360592
AT4G02410.1 Os03t0319300-01 AT5G21274.1 17360592
AT4G02410.1 Os05t0491000-01 AT5G21274.1 17360592
AT4G02410.1 Os05t0491100-01 AT5G21274.1 17360592
AT4G02410.1 Os07t0687200-02 AT5G21274.1 17360592
AT4G02410.1 Os12t0603800-00 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU1Hr1G037000.1 Barley plasma membrane 75.67 80.45
Zm00001d032869_P001 Maize plasma membrane 73.97 76.57
EER94173 Sorghum plasma membrane 75.39 75.93
TraesCS1D01G139700.1 Wheat plasma membrane, plastid 75.81 74.34
Zm00001d032868_P001 Maize plasma membrane 71.43 73.62
Os04t0531400-01 Rice plasma membrane 56.01 62.26
Os03t0772600-01 Rice plasma membrane 40.59 61.06
CDX91325 Canola cytosol, mitochondrion 22.49 60.23
Os10t0441900-01 Rice plasma membrane 58.27 59.62
Os07t0130100-01 Rice plasma membrane 57.28 59.47
Os07t0575600-02 Rice plasma membrane 58.27 59.11
Os07t0130200-01 Rice plasma membrane 56.86 58.43
Os04t0531500-01 Rice plasma membrane 60.54 58.15
Os02t0640500-01 Rice plasma membrane 55.16 57.86
Os07t0283125-00 Rice plasma membrane 54.03 57.1
Os07t0283050-00 Rice plasma membrane 53.04 56.05
Os09t0268000-00 Rice plasma membrane 52.9 55.99
KRH00016 Soybean plasma membrane 51.77 54.87
KRH49145 Soybean plasma membrane 51.49 54.57
Os07t0130400-01 Rice plasma membrane 53.47 54.47
Os07t0131500-00 Rice plasma membrane 48.94 54.4
PGSC0003DMT400022983 Potato plasma membrane 51.06 54.29
VIT_08s0007g00810.t01 Wine grape plasma membrane 51.91 53.97
CDX91384 Canola plasma membrane 50.92 53.49
AT3G53810.1 Thale cress plasma membrane 51.06 53.32
PGSC0003DMT400052365 Potato plasma membrane 50.21 53.3
Bra005168.1-P Field mustard plasma membrane 50.64 53.19
AT2G37710.1 Thale cress plasma membrane 50.78 53.19
Os07t0130800-01 Rice plasma membrane 52.33 52.86
CDY65835 Canola plasma membrane 49.22 52.81
CDY21254 Canola plasma membrane 48.37 52.53
Solyc09g011990.1.1 Tomato plasma membrane 48.8 51.65
Bra000881.1-P Field mustard plasma membrane 49.22 51.56
CDX90939 Canola plasma membrane 48.09 51.44
AT4G02420.1 Thale cress plasma membrane 48.66 51.42
AT4G02410.1 Thale cress plasma membrane 48.94 51.34
CDY55369 Canola plasma membrane 48.51 51.19
Bra035326.1-P Field mustard plasma membrane 48.51 51.12
Bra018553.1-P Field mustard plasma membrane 48.09 50.97
PGSC0003DMT400022743 Potato plasma membrane 47.67 50.45
CDY02414 Canola plasma membrane 41.87 50.17
Solyc09g012000.1.1 Tomato plasma membrane 47.38 50.07
Os07t0575750-00 Rice plasma membrane 48.8 49.86
Os03t0823000-01 Rice plasma membrane 48.66 49.07
Os09t0268100-00 Rice plasma membrane 33.1 48.35
Bra000880.1-P Field mustard plasma membrane 46.39 48.31
Os02t0298200-01 Rice plasma membrane 40.31 48.22
Os02t0299000-00 Rice mitochondrion 40.17 48.05
Os12t0574700-00 Rice plasma membrane 45.54 46.94
Os10t0533800-00 Rice plasma membrane 45.12 45.7
Os07t0129800-00 Rice plasma membrane, vacuole 52.19 43.57
Solyc09g011060.2.1 Tomato plasma membrane 47.67 40.5
Os07t0131375-00 Rice plasma membrane 33.38 39.2
GSMUA_Achr9P09920_001 Banana plasma membrane 39.75 29.64
GSMUA_Achr9P10000_001 Banana cytosol 40.17 14.81
Os07t0575700-01 Rice plasma membrane 7.92 8.35
Os07t0129900-00 Rice plasma membrane 0.0 0.0
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20EntrezGene:4348727ProteinID:ABB47706.1
EMBL:AK071359ProteinID:BAF26608.1ProteinID:BAT11040.1InterPro:ConA-like_dom_sfGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006464
GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016301GO:GO:0016310GO:GO:0016740GO:GO:0019538GO:GO:0030246InterPro:IPR000719
InterPro:Kinase-like_dom_sfInterPro:Legume_lectin_domEnsemblPlantsGene:Os10g0442000EnsemblPlants:Os10t0442000-01PFAM:PF00069PFAM:PF00139
ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27007PANTHER:PTHR27007:SF11InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BSUniProt:Q337T2SMART:SM00220SUPFAM:SSF49899SUPFAM:SSF56112InterPro:Ser/Thr_kinase_AS
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00005E1EDARefSeq:XP_015613162.1SEG:seg:
Description
Similar to Lectin-like receptor kinase 7;2. (Os10t0442000-01)
Coordinates
chr10:+:15877678..15880050
Molecular Weight (calculated)
76292.4 Da
IEP (calculated)
6.572
GRAVY (calculated)
0.014
Length
707 amino acids
Sequence
(BLAST)
001: MTPPRDKWRG ESERAFFAMV SLPCLVVLLL AAAVGVEAAG GGGGGGVEFV YDGFGGAALA LDGMATVTPG GLLLLTNDTD MNKGHAFHPD PVRFVGGGGG
101: GGGGVVASFS TTFVFAIVSE FLDLSTSGFA FLVAPSRDLS AAMPQQYLGM FNASGNGDAR NRIFAVEFDT VRNPEFADIN NNHVGVDVNS LNSSAAATAG
201: YYDDATAAFQ NLSLISRQPM QVWVDYDAAA AEVTVAMAPA RRPRPKKPLL STAVNLSTVV ADAAYVGFSS ASSIVLCKHY VLSWSFRLGG GGAAPALDYA
301: KLPKLPRIGP KPRSKALTVA LPIVTTAIVL TAVAVGFLLL RQRLRYAELR EDWEVEFGPH RFSFKDLYDA TGGFKDKRLL GAGGFGRVYK GVLPRSRTEV
401: AVKRVSHESR QGMREFIAEV VSIGRIRHRN LVQLLGYCRR KGELLLVYDY MPNGSLDKYL HGCDEKPILD WAQRIYIIKG VASGLLYMHE DWEQVVIHRD
501: IKASNVLLDS EMNGRLGDFG LARLYDHGAD PQTTHVVGTM GYLAPEMVRS GKATTRSDVF AFGAFLLEVT CGRRPIEEEE EVAGAGADDD DRFVLVDWVL
601: GHWREGAITD AVDAKLRGEY DAAEAELVLR LGLTCLHPSP AARPSMRQVM QYLDGSAPLP ELPPTYVTFN MLATMDTHQN VYGAWSVRRS SAMSVATVSD
701: IGLSGGR
Best Arabidopsis Sequence Match ( AT3G53810.1 )
(BLAST)
001: MFVKLKLIFF FFLLCQIMIS SSQNLNFTYN GFHPPLTDIS LQGLATVTPN GLLKLTNTSV QKTGHAFCTE RIRFKDSQNG NVSSFSTTFV FAIHSQIPTL
101: SGHGIAFVVA PTLGLPFALP SQYIGLFNIS NNGNDTNHIF AVEFDTIQSS EFGDPNDNHV GIDLNGLRSA NYSTAGYRDD HDKFQNLSLI SRKRIQVWID
201: YDNRSHRIDV TVAPFDSDKP RKPLVSYVRD LSSILLEDMY VGFSSATGSV LSEHFLVGWS FRLNGEAPML SLSKLPKLPR FEPRRISEFY KIGMPLISLS
301: LIFSIIFLAF YIVRRKKKYE EELDDWETEF GKNRFRFKEL YHATKGFKEK DLLGSGGFGR VYRGILPTTK LEVAVKRVSH DSKQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNNPETT LDWKQRSTII KGVASGLFYL HEEWEQVVIH RDVKASNVLL DADFNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHS RTGRATTTTD VYAFGAFLLE VVSGRRPIEF HSASDDTFLL VEWVFSLWLR GNIMEAKDPK LGSSGYDLEE VEMVLKLGLL
601: CSHSDPRARP SMRQVLQYLR GDMALPELTP LDLSAGSVMN LGGRDGFSGI AMTDFSTVFK GFTGGSSIAD SLLSGGR
Arabidopsis Description
LECRK42L-type lectin-domain containing receptor kinase IV.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M345]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.