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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 8
  • golgi 5
  • mitochondrion 1
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:secretory
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:mitochondrion
Plant-mPloc:cytosol, extracellular, nucleus
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 EES01631 AT2G41090.1 17360592
AT4G02410.1 EES09201 AT2G41090.1 17360592
AT4G02410.1 EES16322 AT2G41090.1 17360592
AT4G02410.1 OQU78227 AT2G41090.1 17360592
AT4G02410.1 EES01631 AT2G41100.1 17360592
AT4G02410.1 EES09201 AT2G41100.1 17360592
AT4G02410.1 EES16322 AT2G41100.1 17360592
AT4G02410.1 OQU78227 AT2G41100.1 17360592
AT4G02410.1 KXG37587 AT4G14640.1 17360592
AT4G02410.1 KXG37588 AT4G14640.1 17360592
AT4G02410.1 EES01631 AT5G21274.1 17360592
AT4G02410.1 EES09201 AT5G21274.1 17360592
AT4G02410.1 EES16322 AT5G21274.1 17360592
AT4G02410.1 OQU78227 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d032869_P001 Maize plasma membrane 87.61 90.04
HORVU1Hr1G037000.1 Barley plasma membrane 72.65 76.69
Os10t0442000-01 Rice plasma membrane 75.93 75.39
TraesCS1D01G139700.1 Wheat plasma membrane, plastid 72.22 70.32
OQU88393 Sorghum cytosol 43.3 63.33
OQU82016 Sorghum plasma membrane 60.26 61.22
OQU90148 Sorghum plasma membrane 59.4 61.14
EER93380 Sorghum plasma membrane 58.97 60.61
EER90817 Sorghum plasma membrane 55.56 60.56
EES12555 Sorghum plasma membrane 57.98 60.3
KXG38456 Sorghum plasma membrane 58.97 60.26
EER97934 Sorghum plasma membrane 58.12 59.56
OQU76295 Sorghum cytosol, nucleus, plastid 47.86 59.26
EER99594 Sorghum plasma membrane 57.41 58.92
OQU76282 Sorghum plasma membrane 52.56 58.11
OQU78436 Sorghum cytosol 47.58 57.89
CDX91325 Canola cytosol, mitochondrion 21.65 57.58
EER95837 Sorghum plasma membrane 54.84 57.29
EER98367 Sorghum plasma membrane 54.42 56.93
KXG19863 Sorghum plasma membrane 54.13 56.89
OQU76281 Sorghum plasma membrane 55.56 56.69
EES07549 Sorghum cytosol, plasma membrane, plastid 52.56 56.42
EER93379 Sorghum plasma membrane 54.42 56.26
OQU88865 Sorghum plasma membrane 45.87 56.2
KXG24408 Sorghum plasma membrane 52.99 56.11
EER97932 Sorghum plasma membrane 55.56 56.03
KXG34333 Sorghum plasma membrane 56.98 55.79
KRH49145 Soybean plasma membrane 52.99 55.77
KXG24409 Sorghum plasma membrane 52.99 55.69
KRH00016 Soybean plasma membrane 52.56 55.32
VIT_08s0007g00810.t01 Wine grape plasma membrane 53.56 55.29
AT2G37710.1 Thale cress plasma membrane 52.85 54.96
CDX91384 Canola plasma membrane 52.42 54.68
Bra005168.1-P Field mustard plasma membrane 52.28 54.53
KXG22552 Sorghum plasma membrane 48.72 54.29
PGSC0003DMT400022983 Potato plasma membrane 51.28 54.14
Solyc09g011990.1.1 Tomato plasma membrane 51.28 53.89
OQU76297 Sorghum plasma membrane 44.73 53.49
OQU84848 Sorghum plasma membrane 53.56 53.18
CDY21254 Canola plasma membrane 49.15 53.0
PGSC0003DMT400022743 Potato plasma membrane 50.43 52.99
PGSC0003DMT400052365 Potato plasma membrane 49.86 52.55
Solyc09g012000.1.1 Tomato plasma membrane 50.0 52.47
AT3G53810.1 Thale cress plasma membrane 50.57 52.44
CDY65835 Canola plasma membrane 49.15 52.35
AT4G02420.1 Thale cress plasma membrane 49.72 52.17
Bra000881.1-P Field mustard plasma membrane 50.14 52.15
AT4G02410.1 Thale cress plasma membrane 49.72 51.78
OQU88397 Sorghum cytosol, plasma membrane, plastid 48.29 51.68
CDY55369 Canola plasma membrane 49.29 51.64
CDX90939 Canola plasma membrane 48.58 51.59
Bra035326.1-P Field mustard plasma membrane 49.29 51.56
Bra018553.1-P Field mustard plasma membrane 48.86 51.42
CDY02414 Canola plasma membrane 42.59 50.68
KXG37241 Sorghum mitochondrion 49.86 48.54
Bra000880.1-P Field mustard plasma membrane 46.87 48.45
EER94566 Sorghum plasma membrane 44.3 45.94
EES17246 Sorghum plasma membrane 45.3 45.89
Solyc09g011060.2.1 Tomato plasma membrane 49.86 42.07
GSMUA_Achr9P09920_001 Banana plasma membrane 40.6 30.06
OQU92890 Sorghum plasma membrane 54.27 28.67
GSMUA_Achr9P10000_001 Banana cytosol 40.46 14.81
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20UniProt:C5X0H0InterPro:ConA-like_dom_sf
EnsemblPlants:EER94173ProteinID:EER94173ProteinID:EER94173.1GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006464GO:GO:0006468
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301
GO:GO:0016740GO:GO:0019538GO:GO:0030246InterPro:IPR000719InterPro:Kinase-like_dom_sfInterPro:Legume_lectin_dom
PFAM:PF00069PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27007
PANTHER:PTHR27007:SF11InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220EnsemblPlantsGene:SORBI_3001G237000SUPFAM:SSF49899
SUPFAM:SSF56112unigene:Sbi.20956InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001A831E4
RefSeq:XP_002467175.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr1:-:23964444..23967203
Molecular Weight (calculated)
75770.5 Da
IEP (calculated)
6.404
GRAVY (calculated)
0.007
Length
702 amino acids
Sequence
(BLAST)
001: MWQQVCSAMA ANRVLPMVVV AVMVAATSHG GAVEFAYNGF GGAGLSLDGT ATVTPAGLLQ LTNDTNMSKG HAFHPDPVKF HRAPAGTAGA AAAAVSSFST
101: TFVFAIVSEF LDLSTSGFAF LVAPTTDLST AMPQQYLGMF NGTDNGDARN HVFAVELDTV RNPEFADINN NHVGVDVNSL NSTAAAPAGY FDDDDDGDGT
201: FRNLSLISRD PMQVWLDYDA ATAEVTVAMA PARRPRPRRP LISTKINLSM VITDTAYVGF SSASSIVLVK HYVLGWSFAL DGAAPALDYD KLPKLPRIGP
301: KPRSKALTIA LPIATTVSVL AAVGVACLVL RRRLRYAELR EDWEVEFGPH RFAYKDLYDA TGGFRDKRLL GAGGFGRVYR GVLPASGTEV AVKKVSHESR
401: QGMKEFVAEV ASIGRLRHRN LVPLLGYCRR EGELLLVYDY MPNGSLDKHL HCHGGDDKPV LDWAQRLHII RGVAAGLLYM HEEWEKVVIH RDIKASNVLI
501: DGEMNGRLGD FGLARLYDHG TDPQTTHVVG TMGYLAPELV RSGKATTLSD VFAFGAFLLE VACGRRPIEE EEEHDAAAVG VGDRFVLVDW VLGHWRKGSI
601: TGAVDTRLGL EYDATEADLV LRLGLACLHP SPAARPTMRQ VTQYLDGSAP LPELPATYLT LDTLAGMEGH HSLFDSWFVW RPTSTAATSV ATMSGIALSG
701: GR
Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)
001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR
Arabidopsis Description
LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.