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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • plastid 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, nucleus, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 EES01631 AT2G41090.1 17360592
AT4G02410.1 EES09201 AT2G41090.1 17360592
AT4G02410.1 EES16322 AT2G41090.1 17360592
AT4G02410.1 OQU78227 AT2G41090.1 17360592
AT4G02410.1 EES01631 AT2G41100.1 17360592
AT4G02410.1 EES09201 AT2G41100.1 17360592
AT4G02410.1 EES16322 AT2G41100.1 17360592
AT4G02410.1 OQU78227 AT2G41100.1 17360592
AT4G02410.1 KXG37587 AT4G14640.1 17360592
AT4G02410.1 KXG37588 AT4G14640.1 17360592
AT4G02410.1 EES01631 AT5G21274.1 17360592
AT4G02410.1 EES09201 AT5G21274.1 17360592
AT4G02410.1 EES16322 AT5G21274.1 17360592
AT4G02410.1 OQU78227 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G236300.1 Wheat plasma membrane 70.49 77.61
Os02t0640500-01 Rice plasma membrane 76.15 73.89
TraesCS6D01G219000.1 Wheat plasma membrane 73.85 72.41
TraesCS6B01G265000.1 Wheat plasma membrane 73.7 72.26
EES12555 Sorghum plasma membrane 65.14 63.11
OQU90148 Sorghum plasma membrane 58.72 56.3
OQU88393 Sorghum cytosol 40.67 55.42
EER90817 Sorghum plasma membrane 54.43 55.28
EER97934 Sorghum plasma membrane 57.65 55.04
KXG38456 Sorghum plasma membrane 57.8 55.02
EER93380 Sorghum plasma membrane 56.42 54.03
OQU82016 Sorghum plasma membrane 56.57 53.55
OQU76297 Sorghum plasma membrane 47.71 53.15
EER99594 Sorghum plasma membrane 55.35 52.92
EER94173 Sorghum plasma membrane 56.42 52.56
EER98367 Sorghum plasma membrane 53.67 52.31
KXG24408 Sorghum plasma membrane 52.91 52.19
OQU76282 Sorghum plasma membrane 50.31 51.81
EER97932 Sorghum plasma membrane 55.05 51.72
OQU76295 Sorghum cytosol, nucleus, plastid 44.65 51.5
OQU76281 Sorghum plasma membrane 54.13 51.45
KXG34333 Sorghum plasma membrane 56.12 51.19
CDX91325 Canola cytosol, mitochondrion 20.64 51.14
EER95837 Sorghum plasma membrane 52.45 51.04
EER93379 Sorghum plasma membrane 52.91 50.96
KXG24409 Sorghum plasma membrane 51.38 50.3
KRH49145 Soybean plasma membrane 50.92 49.92
KRH00016 Soybean plasma membrane 50.76 49.78
KXG19863 Sorghum plasma membrane 50.76 49.7
OQU78436 Sorghum cytosol 43.73 49.57
KXG22552 Sorghum plasma membrane 47.4 49.21
Bra018553.1-P Field mustard plasma membrane 50.15 49.18
VIT_08s0007g00810.t01 Wine grape plasma membrane 50.92 48.97
OQU84848 Sorghum plasma membrane 52.91 48.94
CDY55369 Canola plasma membrane 50.0 48.81
Bra005168.1-P Field mustard plasma membrane 50.15 48.74
PGSC0003DMT400022983 Potato plasma membrane 49.54 48.72
OQU88865 Sorghum plasma membrane 42.66 48.69
CDX91384 Canola plasma membrane 50.0 48.59
AT2G37710.1 Thale cress plasma membrane 49.85 48.3
PGSC0003DMT400052365 Potato plasma membrane 48.93 48.05
AT3G53810.1 Thale cress plasma membrane 49.69 48.01
CDY65835 Canola plasma membrane 47.86 47.5
AT4G02410.1 Thale cress plasma membrane 48.62 47.18
CDY21254 Canola plasma membrane 46.94 47.16
AT4G02420.1 Thale cress plasma membrane 48.01 46.94
Solyc09g012000.1.1 Tomato plasma membrane 47.86 46.79
OQU88397 Sorghum cytosol, plasma membrane, plastid 46.79 46.65
CDX90939 Canola plasma membrane 47.09 46.6
Solyc09g011990.1.1 Tomato plasma membrane 47.55 46.56
Bra035326.1-P Field mustard plasma membrane 47.71 46.5
Bra000881.1-P Field mustard plasma membrane 47.71 46.22
CDY02414 Canola plasma membrane 41.59 46.1
PGSC0003DMT400022743 Potato plasma membrane 46.64 45.66
Bra000880.1-P Field mustard plasma membrane 46.02 44.33
EER94566 Sorghum plasma membrane 43.58 42.1
EES17246 Sorghum plasma membrane 44.34 41.85
KXG37241 Sorghum mitochondrion 45.87 41.61
Solyc09g011060.2.1 Tomato plasma membrane 46.48 36.54
OQU92890 Sorghum plasma membrane 56.42 27.77
GSMUA_Achr9P09920_001 Banana plasma membrane 40.21 27.74
GSMUA_Achr9P10000_001 Banana cytosol 41.74 14.24
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20UniProt:C5XSQ1InterPro:ConA-like_dom_sf
EnsemblPlants:EES07549ProteinID:EES07549ProteinID:EES07549.2GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006464GO:GO:0006468
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301
GO:GO:0016740GO:GO:0019538GO:GO:0030246InterPro:IPR000719InterPro:Kinase-like_dom_sfInterPro:Lectin_legB_Mn/Ca_BS
InterPro:Legume_lectin_domPFAM:PF00069PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108ScanProsite:PS00307
PFscan:PS50011PANTHER:PTHR27007PANTHER:PTHR27007:SF3InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220
EnsemblPlantsGene:SORBI_3004G304700SUPFAM:SSF49899SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASTMHMM:TMhelixUniParc:UPI0007F1C56E
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr4:+:64345227..64348211
Molecular Weight (calculated)
71935.7 Da
IEP (calculated)
8.260
GRAVY (calculated)
0.033
Length
654 amino acids
Sequence
(BLAST)
001: MHVNLSKTLD ARAMGQTDRK PIIMRHIPWL LFLTLHRLRL AATAAVDQFT FDGFAGKNVT LDGTAAVTPN GLLMLTNGTT LLKGHAFYPS PLRFGRHDDA
101: SSGGGAVRSF SAAYVFGIVS EYADLSSPGL AFVVAKSTDF STALQSQYMG LANALNNGNA TNHFLAVELD TIVNAEFGDM SNNHVGVNVN GLVSVVADNA
201: GYYEDGTGAF RNMSLLNRTA AQVWVDFDAR TSLVNVTMAP LELPKPRKPL LSTAVNLSAI IEGPEAYVGF SSSTGVVASR HYVLAWSFRM DGPAPPLNLS
301: KLPALPVTIP KPDPWKILKI VLPIASAAFV SALAVVVLLI RRRRHKYAEL REEWEVMFGP HRFSYKDLFH ATKGFCDEHL LGIGGFGRVY RGVLPVSRTE
401: VAVKKVSHES RQGMKEFVAE VVTIGQLRHR NLVQLLGYCR RKGELLLVYD YMPSGSLDKF LHSENSLVLS WNQRLRIITG VASSILYLHE DWEQVVLHRD
501: IKASNVLLDA EMNARLGDFG LARLYDHGTD PHTTHVVGTM GYLAPEIGHT GRASKASDVF AFGVFVLEVS CGRRPVAQDE HGDHRLLLDW VLQHWRHGTI
601: TDAVDPRLHG DFAVEEANRV LKLSLLCSHP LPGSDAKPGV EVALFVICRS WQYL
Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)
001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR
Arabidopsis Description
LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.