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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 2
  • plasma membrane 6
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 EES01631 AT2G41090.1 17360592
AT4G02410.1 EES09201 AT2G41090.1 17360592
AT4G02410.1 EES16322 AT2G41090.1 17360592
AT4G02410.1 OQU78227 AT2G41090.1 17360592
AT4G02410.1 EES01631 AT2G41100.1 17360592
AT4G02410.1 EES09201 AT2G41100.1 17360592
AT4G02410.1 EES16322 AT2G41100.1 17360592
AT4G02410.1 OQU78227 AT2G41100.1 17360592
AT4G02410.1 KXG37587 AT4G14640.1 17360592
AT4G02410.1 KXG37588 AT4G14640.1 17360592
AT4G02410.1 EES01631 AT5G21274.1 17360592
AT4G02410.1 EES09201 AT5G21274.1 17360592
AT4G02410.1 EES16322 AT5G21274.1 17360592
AT4G02410.1 OQU78227 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU76297 Sorghum plasma membrane 66.67 71.55
HORVU7Hr1G000530.1 Barley plasma membrane 70.48 64.72
OQU88393 Sorghum cytosol 48.57 63.75
Os07t0131500-00 Rice plasma membrane 61.11 60.53
OQU76295 Sorghum cytosol, nucleus, plastid 53.49 59.44
HORVU2Hr1G120660.8 Barley plasma membrane 64.29 58.44
OQU78436 Sorghum cytosol 52.06 56.85
KXG19863 Sorghum plasma membrane 58.25 54.94
EER93380 Sorghum plasma membrane 59.52 54.9
EER97934 Sorghum plasma membrane 59.68 54.89
CDX91325 Canola cytosol, mitochondrion 22.86 54.55
KXG24409 Sorghum plasma membrane 57.78 54.49
EER98367 Sorghum plasma membrane 57.78 54.25
EER97932 Sorghum plasma membrane 59.84 54.17
OQU76282 Sorghum plasma membrane 53.97 53.54
OQU76281 Sorghum plasma membrane 58.1 53.2
KXG24408 Sorghum plasma membrane 55.87 53.09
OQU88865 Sorghum plasma membrane 47.94 52.71
EER95837 Sorghum plasma membrane 56.19 52.68
EES12555 Sorghum plasma membrane 54.92 51.26
EER90817 Sorghum plasma membrane 52.06 50.93
KXG34333 Sorghum plasma membrane 57.78 50.77
OQU90148 Sorghum plasma membrane 53.97 49.85
OQU82016 Sorghum plasma membrane 54.6 49.78
KXG38456 Sorghum plasma membrane 54.13 49.64
KRH00016 Soybean plasma membrane 52.22 49.33
EER93379 Sorghum plasma membrane 53.02 49.19
KRH49145 Soybean plasma membrane 51.59 48.73
EER94173 Sorghum plasma membrane 54.29 48.72
PGSC0003DMT400052365 Potato plasma membrane 51.11 48.35
EER99594 Sorghum plasma membrane 52.06 47.95
OQU84848 Sorghum plasma membrane 53.33 47.52
VIT_08s0007g00810.t01 Wine grape plasma membrane 51.27 47.5
EES07549 Sorghum cytosol, plasma membrane, plastid 49.21 47.4
Bra005168.1-P Field mustard plasma membrane 50.32 47.1
CDX91384 Canola plasma membrane 50.32 47.1
Solyc09g012000.1.1 Tomato plasma membrane 50.0 47.09
PGSC0003DMT400022983 Potato plasma membrane 49.68 47.07
OQU88397 Sorghum cytosol, plasma membrane, plastid 48.57 46.65
AT4G02420.1 Thale cress plasma membrane 49.52 46.64
Solyc09g011990.1.1 Tomato plasma membrane 49.37 46.56
CDY21254 Canola plasma membrane 48.1 46.54
AT2G37710.1 Thale cress plasma membrane 49.68 46.37
PGSC0003DMT400022743 Potato plasma membrane 48.73 45.96
CDY65835 Canola plasma membrane 47.62 45.52
AT3G53810.1 Thale cress plasma membrane 48.89 45.49
Bra035326.1-P Field mustard plasma membrane 48.25 45.31
AT4G02410.1 Thale cress plasma membrane 47.94 44.81
Bra018553.1-P Field mustard plasma membrane 47.3 44.68
CDY55369 Canola plasma membrane 47.3 44.48
CDX90939 Canola plasma membrane 46.51 44.33
CDY02414 Canola plasma membrane 41.43 44.24
Bra000880.1-P Field mustard plasma membrane 47.3 43.89
Bra000881.1-P Field mustard plasma membrane 46.51 43.41
KXG37241 Sorghum mitochondrion 45.56 39.81
EES17246 Sorghum plasma membrane 42.7 38.82
EER94566 Sorghum plasma membrane 41.27 38.4
Solyc09g011060.2.1 Tomato plasma membrane 48.73 36.9
GSMUA_Achr9P09920_001 Banana plasma membrane 41.43 27.53
OQU92890 Sorghum plasma membrane 52.54 24.91
GSMUA_Achr9P10000_001 Banana cytosol 39.84 13.09
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20UniProt:A0A1B6PA52InterPro:ConA-like_dom_sf
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016740GO:GO:0019538GO:GO:0030246
InterPro:IPR000719EnsemblPlants:KXG22552ProteinID:KXG22552ProteinID:KXG22552.1InterPro:Kinase-like_dom_sfInterPro:Legume_lectin_dom
PFAM:PF00069PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27007
PANTHER:PTHR27007:SF4InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220EnsemblPlantsGene:SORBI_3009G236300SUPFAM:SSF49899
SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI00081AC602SEG:seg
Description
hypothetical protein
Coordinates
chr9:-:57507657..57511287
Molecular Weight (calculated)
69782.8 Da
IEP (calculated)
6.799
GRAVY (calculated)
-0.085
Length
630 amino acids
Sequence
(BLAST)
001: MKLVLPILLS LISEFSTVIS GSNPPQFVYN GFTGSNLTVD GSARITSAGL IELTNDTSRI KGHALYPSPL RFRHSPDSMF MGLLNSTDNG NSSNHIFAVE
101: LDTVQNTEFG DIDNNHVGVD INSLSSLKSS TAGFHDDSNG RFTNLQLRGS GPIQAWVEYD GNTTRIHVTI APLGMQKPVT PLLSLTYNLS TVVTEEAYIG
201: FSSATGLSTG HHHCVLGWSF GMNSPAPSID SAKLPKLPYL GPRPPSRIME ITLPIASALF VLLTGTIVVL LVRRHFRYKE VHEDWEVEYG PHRFAYKDLY
301: NATKGFSAKN LIGVGGFGRV YKGVLPTSKS EVAVKRVPYN SMQGTKQFVA EVVSMGHLQH NNVVTLFGYC RRKGELLLVY DYMVNGSLDK YLYGKEGRAI
401: LDWGQRFRII KGIAAGLLYL HEEWDKVIIH RDVKPSNVLL DQEMKAQLGD FGLARLYDHG TDPQTTHVVG TIGYLAPELV HRGKATTLTD VFAFGVFILE
501: VTCGKKPVTE DTQGHQLMLV DWVIQNWHED KLLDSVDIRL QGNYDVAEVC LALKLGLLCS HPFPDARPYM RQVLQYLDGD VPLPELLPTH FSFHMLTLVQ
601: EGQVDSSTMS SYPSPRMMDF GSISISLDGR
Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)
001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR
Arabidopsis Description
LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.