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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 9
  • golgi 5
  • plastid 1
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:secretory
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:cytosol, nucleus, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 EES01631 AT2G41090.1 17360592
AT4G02410.1 EES09201 AT2G41090.1 17360592
AT4G02410.1 EES16322 AT2G41090.1 17360592
AT4G02410.1 OQU78227 AT2G41090.1 17360592
AT4G02410.1 EES01631 AT2G41100.1 17360592
AT4G02410.1 EES09201 AT2G41100.1 17360592
AT4G02410.1 EES16322 AT2G41100.1 17360592
AT4G02410.1 OQU78227 AT2G41100.1 17360592
AT4G02410.1 KXG37587 AT4G14640.1 17360592
AT4G02410.1 KXG37588 AT4G14640.1 17360592
AT4G02410.1 EES01631 AT5G21274.1 17360592
AT4G02410.1 EES09201 AT5G21274.1 17360592
AT4G02410.1 EES16322 AT5G21274.1 17360592
AT4G02410.1 OQU78227 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU88393 Sorghum cytosol 41.53 58.75
EER90817 Sorghum plasma membrane 55.23 58.23
CDX91325 Canola cytosol, mitochondrion 22.24 57.2
OQU76295 Sorghum cytosol, nucleus, plastid 47.57 56.97
KXG38456 Sorghum plasma membrane 56.7 56.04
EES12555 Sorghum plasma membrane 55.52 55.85
KXG19863 Sorghum plasma membrane 54.79 55.69
OQU78436 Sorghum cytosol 47.28 55.63
OQU76282 Sorghum plasma membrane 51.99 55.59
EER98367 Sorghum plasma membrane 54.2 54.84
EER93380 Sorghum plasma membrane 55.08 54.76
EER94173 Sorghum plasma membrane 56.26 54.42
OQU90148 Sorghum plasma membrane 54.49 54.25
EER97934 Sorghum plasma membrane 54.64 54.16
OQU76281 Sorghum plasma membrane 54.79 54.07
EER97932 Sorghum plasma membrane 55.38 54.02
EER95837 Sorghum plasma membrane 53.31 53.87
EER99594 Sorghum plasma membrane 54.2 53.8
OQU88865 Sorghum plasma membrane 45.21 53.58
KXG34333 Sorghum plasma membrane 56.55 53.56
KXG24408 Sorghum plasma membrane 52.28 53.54
KXG24409 Sorghum plasma membrane 52.58 53.44
KRH49145 Soybean plasma membrane 52.43 53.37
OQU76297 Sorghum plasma membrane 46.1 53.32
KXG22552 Sorghum plasma membrane 49.19 53.02
CDY21254 Canola plasma membrane 50.81 53.0
EES07549 Sorghum cytosol, plasma membrane, plastid 50.96 52.91
VIT_08s0007g00810.t01 Wine grape plasma membrane 52.87 52.79
KRH00016 Soybean plasma membrane 51.69 52.62
AT2G37710.1 Thale cress plasma membrane 52.28 52.59
CDX91384 Canola plasma membrane 51.69 52.15
PGSC0003DMT400022983 Potato plasma membrane 50.96 52.03
OQU82016 Sorghum plasma membrane 52.87 51.95
Bra005168.1-P Field mustard plasma membrane 51.25 51.71
PGSC0003DMT400022743 Potato plasma membrane 50.81 51.65
PGSC0003DMT400052365 Potato plasma membrane 50.52 51.5
Bra035326.1-P Field mustard plasma membrane 50.81 51.42
AT3G53810.1 Thale cress plasma membrane 51.25 51.4
Solyc09g011990.1.1 Tomato plasma membrane 50.52 51.35
CDY55369 Canola plasma membrane 50.66 51.34
CDY65835 Canola plasma membrane 49.78 51.29
AT4G02420.1 Thale cress plasma membrane 50.52 51.27
CDY02414 Canola plasma membrane 44.33 51.02
OQU88397 Sorghum cytosol, plasma membrane, plastid 49.19 50.91
CDX90939 Canola plasma membrane 49.48 50.83
Solyc09g012000.1.1 Tomato plasma membrane 49.93 50.67
Bra000881.1-P Field mustard plasma membrane 50.37 50.67
Bra018553.1-P Field mustard plasma membrane 49.19 50.08
AT4G02410.1 Thale cress plasma membrane 49.04 49.41
Bra000880.1-P Field mustard plasma membrane 48.6 48.6
OQU84848 Sorghum plasma membrane 50.52 48.51
KXG37241 Sorghum mitochondrion 47.72 44.94
EES17246 Sorghum plasma membrane 44.33 43.43
EER94566 Sorghum plasma membrane 41.38 41.51
Solyc09g011060.2.1 Tomato plasma membrane 49.93 40.75
GSMUA_Achr9P09920_001 Banana plasma membrane 41.68 29.85
OQU92890 Sorghum plasma membrane 55.23 28.22
GSMUA_Achr9P10000_001 Banana cytosol 40.65 14.4
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20UniProt:C5WZ74InterPro:ConA-like_dom_sf
EnsemblPlants:EER93379ProteinID:EER93379ProteinID:EER93379.1GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006464GO:GO:0006468
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301
GO:GO:0016740GO:GO:0019538GO:GO:0030246InterPro:IPR000719InterPro:Kinase-like_dom_sfInterPro:Legume_lectin_dom
PFAM:PF00069PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27007
PANTHER:PTHR27007:SF133InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220EnsemblPlantsGene:SORBI_3001G074900SUPFAM:SSF49899
SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001A82CA7RefSeq:XP_002466381.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr1:-:5706126..5708165
Molecular Weight (calculated)
73390.8 Da
IEP (calculated)
6.368
GRAVY (calculated)
0.059
Length
679 amino acids
Sequence
(BLAST)
001: MPVFVFLLCV SLNLVHSSGG AIDFIFNGFA GANITVDDSA MVTPDGVLVL TNGTYLVKGH GVYPAPLHFR SPSGAGAGVL SFSTTFVFAI LSEYAELSAY
101: GIAFFIAPTK SFTDTLPSQF MGLFNTSDVG NATNHVFAVE LDTLLNVEFG DMDSNHVGID IDGLRSVKAA SAAYYDDEDG SGGVLRNLSL ISGKAMQVWV
201: DYDGPSTEIN VTLAPLRMPK PKKPLLSHVV DLSTVITDKS YVGFASSLGS MSSRHCILGW SFCLNGSSAP PLDYSKLPMP PVAGGGGGRS NTVLEVVLPI
301: GVVAFVLAAI TSVFVFGWRR VKYAELREEW EDEFGPRRFS YKDLFHATGG FDDRHLLGAG GFGKVYKGVL RASKLQVAVK RVSHDSRQGI KEFVAEITSI
401: GRLQHRYLVR LLGYCRRRGE LLLVYEYMPN GSLDKFLYDR GREPALDWCK RFRVIKDVAM GLFYLHNNCE QVIVHRDVKA SNVLLDDAMA GHLGDFGLAR
501: LHDHGGNPRT TRVVGTIGYL APELARTSKA TPLTDVFAFG VFLLEVTCGR RPIEEDARGD GGRVLLVDWV LGRCSEGRIS DCVDARLQGE YDAGEASLAL
601: KLGLLCTQAS PGARPSMPQV LRYLDSSLGL PDPSPTELDF GAMASLQSNG FDSYAMWYPT SSAASDASHG TVSDLSGGR
Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)
001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR
Arabidopsis Description
LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.