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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 9
  • golgi 5
  • plastid 2
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:secretory
ChloroP:plastid
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:cytosol, extracellular, nucleus, plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 EES01631 AT2G41090.1 17360592
AT4G02410.1 EES09201 AT2G41090.1 17360592
AT4G02410.1 EES16322 AT2G41090.1 17360592
AT4G02410.1 OQU78227 AT2G41090.1 17360592
AT4G02410.1 EES01631 AT2G41100.1 17360592
AT4G02410.1 EES09201 AT2G41100.1 17360592
AT4G02410.1 EES16322 AT2G41100.1 17360592
AT4G02410.1 OQU78227 AT2G41100.1 17360592
AT4G02410.1 KXG37587 AT4G14640.1 17360592
AT4G02410.1 KXG37588 AT4G14640.1 17360592
AT4G02410.1 EES01631 AT5G21274.1 17360592
AT4G02410.1 EES09201 AT5G21274.1 17360592
AT4G02410.1 EES16322 AT5G21274.1 17360592
AT4G02410.1 OQU78227 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU90148 Sorghum plasma membrane 61.8 58.36
EER93380 Sorghum plasma membrane 61.18 57.69
OQU88393 Sorghum cytosol 42.55 57.08
KXG38456 Sorghum plasma membrane 59.63 55.9
EER94173 Sorghum plasma membrane 60.56 55.56
EES12555 Sorghum plasma membrane 58.07 55.41
EER93379 Sorghum plasma membrane 58.23 55.23
EER97934 Sorghum plasma membrane 58.7 55.18
OQU82016 Sorghum plasma membrane 58.7 54.7
OQU76295 Sorghum cytosol, nucleus, plastid 48.14 54.67
EER98367 Sorghum plasma membrane 56.83 54.55
EES07549 Sorghum cytosol, plasma membrane, plastid 55.28 54.43
KXG19863 Sorghum plasma membrane 56.06 54.04
EER99594 Sorghum plasma membrane 57.3 53.95
OQU84848 Sorghum plasma membrane 58.7 53.47
OQU76282 Sorghum plasma membrane 52.64 53.39
KXG34333 Sorghum plasma membrane 59.32 53.28
KXG24408 Sorghum plasma membrane 54.81 53.24
OQU78436 Sorghum cytosol 47.36 52.86
EER97932 Sorghum plasma membrane 56.99 52.73
KXG24409 Sorghum plasma membrane 54.66 52.69
OQU76281 Sorghum plasma membrane 56.06 52.47
KXG22552 Sorghum plasma membrane 50.93 52.06
EER95837 Sorghum plasma membrane 54.19 51.93
CDX91325 Canola cytosol, mitochondrion 21.27 51.89
KRH49145 Soybean plasma membrane 53.73 51.87
OQU88865 Sorghum plasma membrane 45.81 51.48
OQU76297 Sorghum plasma membrane 46.89 51.45
KRH00016 Soybean plasma membrane 53.26 51.42
VIT_08s0007g00810.t01 Wine grape plasma membrane 54.04 51.18
PGSC0003DMT400022983 Potato plasma membrane 52.64 50.98
AT2G37710.1 Thale cress plasma membrane 52.64 50.22
AT3G53810.1 Thale cress plasma membrane 52.33 49.78
Solyc09g011990.1.1 Tomato plasma membrane 51.09 49.25
OQU88397 Sorghum cytosol, plasma membrane, plastid 50.0 49.09
CDX91384 Canola plasma membrane 51.09 48.89
CDY65835 Canola plasma membrane 50.0 48.86
PGSC0003DMT400052365 Potato plasma membrane 50.47 48.8
Bra005168.1-P Field mustard plasma membrane 50.31 48.14
AT4G02410.1 Thale cress plasma membrane 50.31 48.07
CDY21254 Canola plasma membrane 48.29 47.77
Solyc09g012000.1.1 Tomato plasma membrane 49.53 47.68
AT4G02420.1 Thale cress plasma membrane 49.53 47.68
CDX90939 Canola plasma membrane 48.91 47.66
CDY55369 Canola plasma membrane 49.07 47.16
PGSC0003DMT400022743 Potato plasma membrane 48.91 47.16
Bra018553.1-P Field mustard plasma membrane 48.76 47.08
Bra035326.1-P Field mustard plasma membrane 48.91 46.94
Bra000881.1-P Field mustard plasma membrane 49.07 46.81
CDY02414 Canola plasma membrane 42.39 46.27
KXG37241 Sorghum mitochondrion 50.78 45.35
Bra000880.1-P Field mustard plasma membrane 46.74 44.33
EER94566 Sorghum plasma membrane 46.27 44.02
EES17246 Sorghum plasma membrane 47.05 43.72
Solyc09g011060.2.1 Tomato plasma membrane 50.0 38.7
GSMUA_Achr9P09920_001 Banana plasma membrane 40.99 27.85
OQU92890 Sorghum plasma membrane 56.68 27.46
GSMUA_Achr9P10000_001 Banana cytosol 43.32 14.55
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20EntrezGene:8084182UniProt:C5WZ73
InterPro:ConA-like_dom_sfEnsemblPlants:EER90817ProteinID:EER90817ProteinID:EER90817.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006464
GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016301GO:GO:0016740GO:GO:0019538GO:GO:0030246InterPro:IPR000719InterPro:Kinase-like_dom_sf
InterPro:Lectin_legB_Mn/Ca_BSInterPro:Legume_lectin_domPFAM:PF00069PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108
ScanProsite:PS00307PFscan:PS50011PANTHER:PTHR27007PANTHER:PTHR27007:SF133InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BS
SMART:SM00220EnsemblPlantsGene:SORBI_3001G074800SUPFAM:SSF49899SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTM
TMHMM:TMhelixUniParc:UPI0001A82283RefSeq:XP_002463819.1SEG:seg::
Description
hypothetical protein
Coordinates
chr1:+:5703842..5705776
Molecular Weight (calculated)
69597.6 Da
IEP (calculated)
6.560
GRAVY (calculated)
0.074
Length
644 amino acids
Sequence
(BLAST)
001: MPLLALAVLL ASLQHAASAG AGQFTYNGFA VASLAVDGAA RVAPSGLLVL TNGTVAMTGH ALHPSPLQFR EPTSNGTGTV RSFSASFVFA IVGQYLHLSS
101: HGLAFFVSRT RSLSTTMPFQ YLGLLNTTDG AGAASNHILA VEFDTVLNYE FGDINNNHVG IDVDSLRSVA AERAGYYADA DADGSVFRDL SLFSREAMQV
201: WVDYDGRSTV LDVTLAPVGV PRPKKPLLSR AVDLAAVVPA EAYVGFSSST GVMACSHYVL GWSFALDGAA PPLDVSRLPD YPRPSSKPGR RRKVLAIVLP
301: IAAVAAAAVV TVAAVLVCVR RRMEYAELRE DWEAEFGAHR FAYKDLHRAT GGFADKRLIG QGGSGEVYRG VLPRCNAEVA VKRVSDESRQ GMKEFVAEVA
401: SMGRLRHRNL VPLLGYCRRK GELLLVYMYM PNGSLEKLLY DQGSKVTLGW DQRFRIIKDI AAGLLYLHEE WEQVIVHRDI KPSNVLLDDE MNGRLGDFGL
501: ARLYDHGASS YTTRVVGTTG YLAPELMRTG KANPATDVFA FGAFLLEVAC GRRPIEQGME GEDFALVDHV LGHCLSGSLM EAVDSKLQDD YDAEEVCLAL
601: KLGLLCSHPL ASERPSMRQV VQYLDGGAAF PELALTNLNA GKLM
Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)
001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR
Arabidopsis Description
LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.