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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 9
  • golgi 5
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:cytosol, extracellular, nucleus, plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 EES01631 AT2G41090.1 17360592
AT4G02410.1 EES09201 AT2G41090.1 17360592
AT4G02410.1 EES16322 AT2G41090.1 17360592
AT4G02410.1 OQU78227 AT2G41090.1 17360592
AT4G02410.1 EES01631 AT2G41100.1 17360592
AT4G02410.1 EES09201 AT2G41100.1 17360592
AT4G02410.1 EES16322 AT2G41100.1 17360592
AT4G02410.1 OQU78227 AT2G41100.1 17360592
AT4G02410.1 KXG37587 AT4G14640.1 17360592
AT4G02410.1 KXG37588 AT4G14640.1 17360592
AT4G02410.1 EES01631 AT5G21274.1 17360592
AT4G02410.1 EES09201 AT5G21274.1 17360592
AT4G02410.1 EES16322 AT5G21274.1 17360592
AT4G02410.1 OQU78227 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d034217_P001 Maize plasma membrane 89.75 90.41
Os03t0772600-01 Rice plasma membrane 54.47 79.15
TraesCS5B01G410900.1 Wheat plasma membrane 77.6 77.83
TraesCS5A01G406100.1 Wheat plasma membrane 77.31 77.42
HORVU5Hr1G098640.1 Barley plasma membrane 77.16 77.05
TraesCS5D01G416100.1 Wheat plastid 60.18 75.41
OQU88393 Sorghum cytosol 49.19 70.0
OQU76295 Sorghum cytosol, nucleus, plastid 54.61 65.78
EER97934 Sorghum plasma membrane 64.86 64.67
EER95837 Sorghum plasma membrane 61.93 62.95
EER97932 Sorghum plasma membrane 64.13 62.93
OQU76281 Sorghum plasma membrane 62.66 62.21
OQU78436 Sorghum cytosol 52.42 62.05
KXG24409 Sorghum plasma membrane 60.47 61.83
EES12555 Sorghum plasma membrane 60.61 61.33
OQU88865 Sorghum plasma membrane 51.39 61.26
EER98367 Sorghum plasma membrane 60.18 61.25
EER90817 Sorghum plasma membrane 57.69 61.18
OQU90148 Sorghum plasma membrane 60.32 60.41
OQU76282 Sorghum plasma membrane 55.93 60.16
KXG24408 Sorghum plasma membrane 58.27 60.03
KXG22552 Sorghum plasma membrane 54.9 59.52
EER94173 Sorghum plasma membrane 60.61 58.97
OQU82016 Sorghum plasma membrane 59.3 58.61
KXG38456 Sorghum plasma membrane 58.57 58.22
OQU76297 Sorghum plasma membrane 49.93 58.09
KXG19863 Sorghum plasma membrane 56.81 58.08
KRH49145 Soybean plasma membrane 56.08 57.42
CDX91325 Canola cytosol, mitochondrion 22.11 57.2
KXG34333 Sorghum plasma membrane 60.03 57.18
KRH00016 Soybean plasma membrane 55.78 57.12
CDX91384 Canola plasma membrane 56.22 57.06
EER99594 Sorghum plasma membrane 57.1 57.02
Bra005168.1-P Field mustard plasma membrane 56.08 56.91
OQU84848 Sorghum plasma membrane 58.57 56.58
AT2G37710.1 Thale cress plasma membrane 55.78 56.44
EES07549 Sorghum cytosol, plasma membrane, plastid 54.03 56.42
VIT_08s0007g00810.t01 Wine grape plasma membrane 55.78 56.03
PGSC0003DMT400022983 Potato plasma membrane 53.88 55.34
EER93379 Sorghum plasma membrane 54.76 55.08
AT3G53810.1 Thale cress plasma membrane 54.47 54.95
CDY65835 Canola plasma membrane 53.0 54.93
CDY21254 Canola plasma membrane 51.83 54.38
PGSC0003DMT400052365 Potato plasma membrane 52.56 53.9
Solyc09g011990.1.1 Tomato plasma membrane 52.71 53.89
PGSC0003DMT400022743 Potato plasma membrane 51.83 52.99
Bra035326.1-P Field mustard plasma membrane 51.98 52.91
OQU88397 Sorghum cytosol, plasma membrane, plastid 50.22 52.29
Bra018553.1-P Field mustard plasma membrane 50.66 51.87
Solyc09g012000.1.1 Tomato plasma membrane 50.81 51.87
CDY02414 Canola plasma membrane 44.36 51.36
CDY55369 Canola plasma membrane 50.37 51.34
AT4G02420.1 Thale cress plasma membrane 49.93 50.97
AT4G02410.1 Thale cress plasma membrane 50.07 50.74
CDX90939 Canola plasma membrane 49.05 50.68
Bra000881.1-P Field mustard plasma membrane 49.34 49.93
Bra000880.1-P Field mustard plasma membrane 48.32 48.6
EES17246 Sorghum plasma membrane 47.0 46.32
KXG37241 Sorghum mitochondrion 48.61 46.05
EER94566 Sorghum plasma membrane 44.07 44.46
Solyc09g011060.2.1 Tomato plasma membrane 51.39 42.19
GSMUA_Achr9P09920_001 Banana plasma membrane 42.02 30.27
OQU92890 Sorghum plasma membrane 57.83 29.72
GSMUA_Achr9P10000_001 Banana cytosol 43.19 15.39
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20EntrezGene:8084183UniProt:C5WZ75
InterPro:ConA-like_dom_sfEnsemblPlants:EER93380ProteinID:EER93380ProteinID:EER93380.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006464
GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016301GO:GO:0016740GO:GO:0019538GO:GO:0030246InterPro:IPR000719InterPro:Kinase-like_dom_sf
InterPro:Legume_lectin_domPFAM:PF00069PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011
PANTHER:PTHR27007PANTHER:PTHR27007:SF133InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220EnsemblPlantsGene:SORBI_3001G075000
SUPFAM:SSF49899SUPFAM:SSF56112unigene:Sbi.4361InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI0001A82CA8RefSeq:XP_002466382.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr1:-:5710449..5713111
Molecular Weight (calculated)
74466.4 Da
IEP (calculated)
6.516
GRAVY (calculated)
0.006
Length
683 amino acids
Sequence
(BLAST)
001: MVDFRHARSL LAAGVLLAGV VVAVLGAGED DEHFVYSGFT GAPLALDGTA TITASGLLEL TNGTAQLKGH AVHPAPLRFQ RTPGGPVRSF SASFVFGIIP
101: PYSDLSGHGI VFFVGKDSFA NALPSQYLGF LNTNNNGNAS NRVFGVELDT IRSTEFKDPD DNHVGIDINS LTSVNATNAG YYDDGTGEFH NLTLISAKPM
201: QVWVDYDGET ARINVFLTPL GTSKPSRPLV SATWNLSDVL VEPAYVGFSS ATGTVKSEHY VLGWSFAMDG PAPDINVASL PKLPRFGPEP RSKVLEIVLP
301: IATAAFVLAV VAVVVALVRR RLKYAELRED WEVEFGPHRF TYKDLFRATE GFKSKMLLGV GGFGRVYRGV LPKSKLEVAV KKVSHESRQG IKEFVAEVVS
401: IGRLRHRNLV QLLGYCRRKG ELLLVYDYMP NGSLDKYLYG KGDDDKAMAT LDWVQRFRII KGVASGLLYI HEDWEQVVIH RDIKASNVLL DSEMNGRLGD
501: FGLARLYDHG ADPQTTHVVG TMGYLAPELA RSGKASPLTD VFAFGAFILE VVCGRRPVEQ SMTDSRLMLV DWVLEHWQKG SLAEVIDAKL QGCYDDEEAM
601: LALKLGLLCS HPLPAARPSM RQVMQYLDGD MPFPELTPSH LSFSMLALMR SEGFDSFVLS ASTNPSSSTA MSIGTMTGLS GGR
Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)
001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR
Arabidopsis Description
LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.