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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • plasma membrane 8
  • extracellular 5
  • endoplasmic reticulum 4
  • vacuole 5
  • golgi 4
  • mitochondrion 1
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:cytosol, extracellular, mitochondrion, nucleus, plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 EES01631 AT2G41090.1 17360592
AT4G02410.1 EES09201 AT2G41090.1 17360592
AT4G02410.1 EES16322 AT2G41090.1 17360592
AT4G02410.1 OQU78227 AT2G41090.1 17360592
AT4G02410.1 EES01631 AT2G41100.1 17360592
AT4G02410.1 EES09201 AT2G41100.1 17360592
AT4G02410.1 EES16322 AT2G41100.1 17360592
AT4G02410.1 OQU78227 AT2G41100.1 17360592
AT4G02410.1 KXG37587 AT4G14640.1 17360592
AT4G02410.1 KXG37588 AT4G14640.1 17360592
AT4G02410.1 EES01631 AT5G21274.1 17360592
AT4G02410.1 EES09201 AT5G21274.1 17360592
AT4G02410.1 EES16322 AT5G21274.1 17360592
AT4G02410.1 OQU78227 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU88393 Sorghum cytosol 45.39 63.54
EER93380 Sorghum plasma membrane 62.95 61.93
OQU78436 Sorghum cytosol 52.83 61.53
OQU76295 Sorghum cytosol, nucleus, plastid 51.04 60.49
KXG19863 Sorghum plasma membrane 59.52 59.88
KXG24408 Sorghum plasma membrane 58.78 59.58
KXG24409 Sorghum plasma membrane 59.08 59.43
EER98367 Sorghum plasma membrane 59.08 59.17
EER97934 Sorghum plasma membrane 59.38 58.25
EES12555 Sorghum plasma membrane 57.59 57.33
EER97932 Sorghum plasma membrane 59.38 57.33
CDX91325 Canola cytosol, mitochondrion 22.47 57.2
OQU90148 Sorghum plasma membrane 57.89 57.04
OQU76282 Sorghum plasma membrane 53.72 56.85
OQU88865 Sorghum plasma membrane 48.21 56.54
KXG22552 Sorghum plasma membrane 52.68 56.19
OQU76281 Sorghum plasma membrane 57.44 56.1
OQU76297 Sorghum plasma membrane 48.07 55.03
EER94173 Sorghum plasma membrane 57.29 54.84
OQU82016 Sorghum plasma membrane 56.25 54.7
EER90817 Sorghum plasma membrane 51.93 54.19
CDX91384 Canola plasma membrane 54.02 53.94
Bra005168.1-P Field mustard plasma membrane 53.72 53.64
KXG38456 Sorghum plasma membrane 54.76 53.57
AT2G37710.1 Thale cress plasma membrane 53.72 53.48
EER93379 Sorghum plasma membrane 53.87 53.31
KRH00016 Soybean plasma membrane 52.83 53.22
KRH49145 Soybean plasma membrane 52.83 53.22
EER99594 Sorghum plasma membrane 54.02 53.07
KXG34333 Sorghum plasma membrane 56.25 52.72
EES07549 Sorghum cytosol, plasma membrane, plastid 51.04 52.45
OQU84848 Sorghum plasma membrane 54.91 52.19
CDY65835 Canola plasma membrane 51.04 52.05
PGSC0003DMT400052365 Potato plasma membrane 50.89 51.35
PGSC0003DMT400022983 Potato plasma membrane 50.6 51.13
AT3G53810.1 Thale cress plasma membrane 51.49 51.11
AT4G02420.1 Thale cress plasma membrane 50.6 50.82
VIT_08s0007g00810.t01 Wine grape plasma membrane 51.34 50.74
CDY21254 Canola plasma membrane 49.11 50.69
Bra018553.1-P Field mustard plasma membrane 50.3 50.67
OQU88397 Sorghum cytosol, plasma membrane, plastid 49.4 50.61
Solyc09g012000.1.1 Tomato plasma membrane 50.0 50.22
PGSC0003DMT400022743 Potato plasma membrane 49.85 50.15
CDY55369 Canola plasma membrane 50.0 50.15
Solyc09g011990.1.1 Tomato plasma membrane 49.7 50.0
CDX90939 Canola plasma membrane 48.96 49.77
AT4G02410.1 Thale cress plasma membrane 49.85 49.7
Bra035326.1-P Field mustard plasma membrane 49.4 49.48
Bra000881.1-P Field mustard plasma membrane 49.26 49.04
CDY02414 Canola plasma membrane 42.71 48.64
Bra000880.1-P Field mustard plasma membrane 47.02 46.54
KXG37241 Sorghum mitochondrion 46.58 43.41
EER94566 Sorghum plasma membrane 43.01 42.69
EES17246 Sorghum plasma membrane 42.86 41.56
Solyc09g011060.2.1 Tomato plasma membrane 50.0 40.38
GSMUA_Achr9P09920_001 Banana plasma membrane 41.07 29.11
OQU92890 Sorghum plasma membrane 55.95 28.29
GSMUA_Achr9P10000_001 Banana cytosol 41.07 14.4
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20EntrezGene:8059924UniProt:C5X8T9
InterPro:ConA-like_dom_sfEnsemblPlants:EER95837ProteinID:EER95837ProteinID:EER95837.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006464
GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016301GO:GO:0016740GO:GO:0019538GO:GO:0030246InterPro:IPR000719InterPro:Kinase-like_dom_sf
InterPro:Legume_lectin_domPFAM:PF00069PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011
PANTHER:PTHR27007PANTHER:PTHR27007:SF133InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220EnsemblPlantsGene:SORBI_3002G025700
SUPFAM:SSF49899SUPFAM:SSF56112unigene:Sbi.21270InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI0001A82E36RefSeq:XP_002459316.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr2:+:2367136..2369285
Molecular Weight (calculated)
75052.5 Da
IEP (calculated)
6.803
GRAVY (calculated)
-0.083
Length
672 amino acids
Sequence
(BLAST)
001: MMQHTLSLLL IPSLFLGINQ ATSSIDNAGF IYSGFNGANL TLDGMATITS SGLLQLSSGN GEHKGHAFHP ELLRFHKAPR GKVQSFSVSF VFAILSIAPN
101: LSSHGMAFLI SPSTNLSSSG TRGFLGLFNR QNSGNASNHI FAVELDTIQN TEFQDISDNH IGVDVNDIRS VRSNYTGYYD DSQGRYQNLT LNSHEPMQVW
201: VDYDEVTTKI SVTIAPLKMS KPMRPLILTT YNLSTVLTDQ AYVGFSSTTG SIDSQHYVLG WSFAMNQSAP GIDVDKLPKL PHEGSKNSSK VMEIVMPIAT
301: AIFILVVAVV IFQFMWRRLK YAELREDWEV EFGPHRLSYK DLFSATQGFK SKHLLGVGGF GSVYRGVLPM SKLEVAVKKV SHESRQGIKE FIAEVVSIGR
401: MRHRNLVPLL GYCRRRGELL LVYEFMPNGS LDKYLYVEDD KPSLNWVQRF HIIKGIASGL LYLHEEWDQV VIHRDIKASN VLLDNEMNAR LGDFGLAKLY
501: DHGIDAQTTH VVGTMGYIAP ELARTGKASP ITDVFAFGVF LLEVTCGRRP VEHNRENNTV SMLVDWVLEK WHKGLLTKVV DPRIQDEFDI NQTILVLKLG
601: LLCSHPVPDS RPTMRQVMQY LDGDMMLPEQ MPESLTLGMQ FMMQSEGFDS YIMSQATTMV SHGTLTDISG GR
Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)
001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR
Arabidopsis Description
LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.