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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 10
  • golgi 5
  • nucleus 1
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, secretory
BaCelLo:secretory
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:cytosol, nucleus, plasma membrane
Predotar:secretory
PProwler:secretory
PTS1:peroxisome
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 EES01631 AT2G41090.1 17360592
AT4G02410.1 EES09201 AT2G41090.1 17360592
AT4G02410.1 EES16322 AT2G41090.1 17360592
AT4G02410.1 OQU78227 AT2G41090.1 17360592
AT4G02410.1 EES01631 AT2G41100.1 17360592
AT4G02410.1 EES09201 AT2G41100.1 17360592
AT4G02410.1 EES16322 AT2G41100.1 17360592
AT4G02410.1 OQU78227 AT2G41100.1 17360592
AT4G02410.1 KXG37587 AT4G14640.1 17360592
AT4G02410.1 KXG37588 AT4G14640.1 17360592
AT4G02410.1 EES01631 AT5G21274.1 17360592
AT4G02410.1 EES09201 AT5G21274.1 17360592
AT4G02410.1 EES16322 AT5G21274.1 17360592
AT4G02410.1 OQU78227 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2B01G388800.1 Wheat plasma membrane 81.77 83.46
TraesCS2A01G371600.1 Wheat plasma membrane 80.9 82.45
Os04t0531500-01 Rice plasma membrane 84.66 79.48
TraesCS2D01G367900.1 Wheat plasma membrane, plastid 81.62 77.47
OQU88393 Sorghum cytosol 47.18 67.92
OQU76295 Sorghum cytosol, nucleus, plastid 52.53 64.02
OQU78436 Sorghum cytosol 51.66 61.87
EER99594 Sorghum plasma membrane 60.78 61.4
EES12555 Sorghum plasma membrane 59.19 60.59
EER97934 Sorghum plasma membrane 59.91 60.44
EER94173 Sorghum plasma membrane 61.22 60.26
Zm00001d025921_P001 Maize extracellular 84.52 59.96
EER93380 Sorghum plasma membrane 58.61 59.3
KXG38456 Sorghum plasma membrane 58.47 58.81
OQU90148 Sorghum plasma membrane 58.03 58.8
EER90817 Sorghum plasma membrane 54.7 58.7
EER98367 Sorghum plasma membrane 56.44 58.12
OQU76281 Sorghum plasma membrane 57.74 57.99
CDX91325 Canola cytosol, mitochondrion 22.0 57.58
OQU88865 Sorghum plasma membrane 47.47 57.24
KXG24409 Sorghum plasma membrane 55.28 57.19
EES07549 Sorghum cytosol, plasma membrane, plastid 53.55 56.57
EER95837 Sorghum plasma membrane 54.7 56.25
EER97932 Sorghum plasma membrane 56.58 56.18
KXG24408 Sorghum plasma membrane 53.84 56.11
OQU76282 Sorghum plasma membrane 51.37 55.91
KXG22552 Sorghum plasma membrane 49.78 54.6
KXG19863 Sorghum plasma membrane 52.53 54.34
KXG34333 Sorghum plasma membrane 56.15 54.11
AT2G37710.1 Thale cress plasma membrane 52.82 54.07
Bra005168.1-P Field mustard plasma membrane 51.95 53.34
OQU76297 Sorghum plasma membrane 45.15 53.15
VIT_08s0007g00810.t01 Wine grape plasma membrane 52.1 52.94
AT3G53810.1 Thale cress plasma membrane 51.81 52.88
EER93379 Sorghum plasma membrane 51.95 52.87
KRH00016 Soybean plasma membrane 50.94 52.77
KRH49145 Soybean plasma membrane 50.94 52.77
CDX91384 Canola plasma membrane 51.37 52.75
OQU88397 Sorghum cytosol, plasma membrane, plastid 50.07 52.74
CDY65835 Canola plasma membrane 49.78 52.2
OQU84848 Sorghum plasma membrane 52.97 51.77
PGSC0003DMT400022983 Potato plasma membrane 49.78 51.73
CDY55369 Canola plasma membrane 50.07 51.64
Bra018553.1-P Field mustard plasma membrane 49.78 51.57
CDY21254 Canola plasma membrane 48.48 51.46
Solyc09g011990.1.1 Tomato plasma membrane 49.35 51.05
PGSC0003DMT400022743 Potato plasma membrane 49.35 51.05
AT4G02420.1 Thale cress plasma membrane 49.2 50.82
AT4G02410.1 Thale cress plasma membrane 49.49 50.74
Solyc09g012000.1.1 Tomato plasma membrane 49.06 50.67
Bra035326.1-P Field mustard plasma membrane 48.91 50.37
PGSC0003DMT400052365 Potato plasma membrane 48.48 50.3
Bra000881.1-P Field mustard plasma membrane 48.91 50.07
CDX90939 Canola plasma membrane 47.47 49.62
CDY02414 Canola plasma membrane 41.82 48.98
Bra000880.1-P Field mustard plasma membrane 46.31 47.13
EER94566 Sorghum plasma membrane 43.99 44.9
KXG37241 Sorghum mitochondrion 46.74 44.8
EES17246 Sorghum plasma membrane 44.72 44.59
Solyc09g011060.2.1 Tomato plasma membrane 49.06 40.75
OQU92890 Sorghum plasma membrane 59.48 30.93
GSMUA_Achr9P09920_001 Banana plasma membrane 41.68 30.38
GSMUA_Achr9P10000_001 Banana cytosol 38.93 14.03
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20EntrezGene:8056046UniProt:A0A1Z5RF48
InterPro:ConA-like_dom_sfGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016740GO:GO:0019538
GO:GO:0030246InterPro:IPR000719InterPro:Kinase-like_dom_sfInterPro:Legume_lectin_domEnsemblPlants:OQU82016ProteinID:OQU82016
ProteinID:OQU82016.1PFAM:PF00069PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011
PANTHER:PTHR27007PANTHER:PTHR27007:SF57InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220EnsemblPlantsGene:SORBI_3006G158266
SUPFAM:SSF49899SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0001A86EEC
RefSeq:XP_002446842.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr6:+:51675394..51678874
Molecular Weight (calculated)
75225.7 Da
IEP (calculated)
7.047
GRAVY (calculated)
0.059
Length
691 amino acids
Sequence
(BLAST)
001: MGRPSLPLLP IFLLLAAVCS DHAAMLAAAE EFTYNGFGDA NLSLDGMSVV APNGLLVLSN GTSQMAGHAF HPAPVRLRDG PGGAVRSFSA AFVFAIVSNF
101: TVLSDNGMAF VVAPSTRLST FNAGQYLGIL NVTDNGKDGN RVLFVELDTM LNPEFQDMNS NHLGVNVNSM RSLQNHSAGY YDDATGVFNN LSLISRQPMQ
201: VWVDYDGATT RLDVTMAPVD VTMAPVDVPR PRKPLISAPV NLSAVGADDT AYVGFSAATG VIYTRHYVLG WSFATDGAAA PALDISKLPA LPRFGPKPRS
301: KVLEIVLPIA TAAFVLALVV VAFLWVRRRV RYAEVREDWE VEFGPHRFSY KELYHATKGF KNKMLLGTGG FGRVYKGVLP KSKLEIAVKR VSHDSKQGMK
401: EFIAEVVSIG HLRHRNLVQL LGYCRRKGEL LLVYDYMSNG SLDKYLHDKT RPVVLDWEQR FHIIKGVASG LLYLHEDWEK IVIHRDIKAS NVLLDGDMNG
501: RLGDFGLARL YDHGVDPQTT HVVGTMGYLA PELVRTGKAT PVTDVFAFGV FVLEVACGRR PLGCIAPDEQ SVLLDWVQEH DRKGAALDTV DARLCGKYDA
601: DEARLVIRLG LMCAHPLPDA RPGMRQVVQY LEGDTAMPEV APTYVSYTML ALMQNDGFDS FAAMSFPSTV SSSVSPVSGG FSSVSGLSGG R
Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)
001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR
Arabidopsis Description
LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.