Factsheet for Os04t0531500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 5
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plasma membrane: 18260611
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os03t0743500-02
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02410.1	Os01t0267900-01	AT2G41090.1	17360592
AT4G02410.1	Os01t0279300-01	AT2G41090.1	17360592
AT4G02410.1	Os01t0810300-01	AT2G41090.1	17360592
AT4G02410.1	Os03t0319300-01	AT2G41090.1	17360592
AT4G02410.1	Os05t0491000-01	AT2G41090.1	17360592
AT4G02410.1	Os05t0491100-01	AT2G41090.1	17360592
AT4G02410.1	Os07t0687200-02	AT2G41090.1	17360592
AT4G02410.1	Os12t0603800-00	AT2G41090.1	17360592
AT4G02410.1	Os01t0267900-01	AT2G41100.1	17360592
AT4G02410.1	Os01t0279300-01	AT2G41100.1	17360592
AT4G02410.1	Os01t0810300-01	AT2G41100.1	17360592
AT4G02410.1	Os03t0319300-01	AT2G41100.1	17360592
AT4G02410.1	Os05t0491000-01	AT2G41100.1	17360592
AT4G02410.1	Os05t0491100-01	AT2G41100.1	17360592
AT4G02410.1	Os07t0687200-02	AT2G41100.1	17360592
AT4G02410.1	Os12t0603800-00	AT2G41100.1	17360592
AT4G02410.1	Os03t0743500-02	AT4G14640.1	17360592
AT4G02410.1	Os01t0267900-01	AT5G21274.1	17360592
AT4G02410.1	Os01t0279300-01	AT5G21274.1	17360592
AT4G02410.1	Os01t0810300-01	AT5G21274.1	17360592
AT4G02410.1	Os03t0319300-01	AT5G21274.1	17360592
AT4G02410.1	Os05t0491000-01	AT5G21274.1	17360592
AT4G02410.1	Os05t0491100-01	AT5G21274.1	17360592
AT4G02410.1	Os07t0687200-02	AT5G21274.1	17360592
AT4G02410.1	Os12t0603800-00	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G388800.1	Wheat	plasma membrane	79.35	86.26
TraesCS2A01G371600.1	Wheat	plasma membrane	78.53	85.25
OQU82016	Sorghum	plasma membrane	79.48	84.66
TraesCS2D01G367900.1	Wheat	plasma membrane, plastid	80.84	81.73
Os04t0531400-01	Rice	plasma membrane	54.89	63.52
Os03t0772600-01	Rice	plasma membrane	39.54	61.91
Os07t0575600-02	Rice	plasma membrane	58.56	61.84
Os07t0130200-01	Rice	plasma membrane	57.2	61.19
Os10t0442000-01	Rice	plasma membrane	58.15	60.54
Os07t0283125-00	Rice	plasma membrane	54.48	59.94
Os07t0130100-01	Rice	plasma membrane	54.89	59.32
Os07t0283050-00	Rice	plasma membrane	53.67	59.04
Os02t0640500-01	Rice	plasma membrane	53.94	58.9
CDX91325	Canola	cytosol, mitochondrion	21.06	58.71
Os10t0441900-01	Rice	plasma membrane	54.89	58.47
Zm00001d025921_P001	Maize	extracellular	76.36	57.7
Os07t0130400-01	Rice	plasma membrane	53.8	57.06
Os09t0268000-00	Rice	plasma membrane	51.22	56.44
AT2G37710.1	Thale cress	plasma membrane	50.54	55.11
VIT_08s0007g00810.t01	Wine grape	plasma membrane	50.82	55.0
KRH00016	Soybean	plasma membrane	49.73	54.87
PGSC0003DMT400022983	Potato	plasma membrane	49.46	54.74
KRH49145	Soybean	plasma membrane	49.46	54.57
Os07t0130800-01	Rice	plasma membrane	51.77	54.43
Bra005168.1-P	Field mustard	plasma membrane	49.73	54.38
Os07t0131500-00	Rice	plasma membrane	46.88	54.25
CDX91384	Canola	plasma membrane	49.59	54.23
CDY21254	Canola	plasma membrane	47.69	53.92
AT3G53810.1	Thale cress	plasma membrane	49.05	53.32
CDY65835	Canola	plasma membrane	47.69	53.26
PGSC0003DMT400052365	Potato	plasma membrane	47.83	52.85
Bra035326.1-P	Field mustard	plasma membrane	47.83	52.46
Solyc09g011990.1.1	Tomato	plasma membrane	47.55	52.4
PGSC0003DMT400022743	Potato	plasma membrane	47.42	52.25
CDY55369	Canola	plasma membrane	47.55	52.24
AT4G02420.1	Thale cress	plasma membrane	47.42	52.17
Bra018553.1-P	Field mustard	plasma membrane	47.01	51.87
Solyc09g012000.1.1	Tomato	plasma membrane	46.74	51.42
Bra000881.1-P	Field mustard	plasma membrane	47.01	51.26
AT4G02410.1	Thale cress	plasma membrane	46.88	51.19
CDX90939	Canola	plasma membrane	45.65	50.83
CDY02414	Canola	plasma membrane	40.49	50.51
Os09t0268100-00	Rice	plasma membrane	33.15	50.41
Os02t0299000-00	Rice	mitochondrion	39.81	49.58
Os07t0575750-00	Rice	plasma membrane	46.47	49.42
Os02t0298200-01	Rice	plasma membrane	39.54	49.24
Bra000880.1-P	Field mustard	plasma membrane	44.02	47.72
Os12t0574700-00	Rice	plasma membrane	43.61	46.79
Os03t0823000-01	Rice	plasma membrane	43.75	45.93
Os10t0533800-00	Rice	plasma membrane	43.34	45.7
Os07t0129800-00	Rice	plasma membrane, vacuole	52.45	45.57
Solyc09g011060.2.1	Tomato	plasma membrane	47.15	41.71
Os07t0131375-00	Rice	plasma membrane	31.66	38.7
GSMUA_Achr9P09920_001	Banana	plasma membrane	39.4	30.59
GSMUA_Achr9P10000_001	Banana	cytosol	38.72	14.87
Os07t0575700-01	Rice	plasma membrane	7.47	8.2
Os07t0129900-00	Rice	plasma membrane	0.14	0.15

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.19	Gene3D:2.60.120.200	Gene3D:3.30.200.20	EntrezGene:4336490	ProteinID:BAF15311.1
ProteinID:BAS90217.1	InterPro:ConA-like_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0030246	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	InterPro:Legume_lectin_dom	EnsemblPlantsGene:Os04g0531500
EnsemblPlants:Os04t0531500-01	PFAM:PF00069	PFAM:PF00139	ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011
PANTHER:PTHR27007	PANTHER:PTHR27007:SF57	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	UniProt:Q0JBH6	SMART:SM00220
SUPFAM:SSF49899	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TMHMM:TMhelix	UniParc:UPI0000DD91B9	RefSeq:XP_015635471.1
SEG:seg	:	:	:	:	:

Description

Concanavalin A-like lectin/glucanase domain containing protein. (Os04t0531500-01)

Coordinates

chr4:+:26576255..26578707

Molecular Weight (calculated)

79796.8 Da

IEP (calculated)

6.820

GRAVY (calculated)

0.023

Length

736 amino acids

Sequence
(BLAST)

001: MPHTTSKPGI MVGVRCSCID SNSESSVQTF DAMTRIAVTT HHMPCANCNS QTEANLPMGN HRLLLLLLLL LAVVGSDHGG VLAADEFTYN GFGGANLTLD
101: GMAAVAPNGL LVLSNGTNQM AGHAFHPTPI RLRGGAAGGA VQSFSAAFVF AIVSNFTVLS DNGMAFVVAP STRLSTFNAG QYLGILNVTD NGNADNNIFA
201: VELDTMLNPE FQDMNSNHIG VDINSMKSVQ NHSAGYYDEA TGAFNNLSLI SRQPMQVWVD YDGATTVLNV TMAPLDVPKP SKPLISAPVN LSSVVTDTAY
301: VGFSAATGVI YTRHYVLGWS FSQNGAAPSL HTSSLPALPR FGPKPRSKVL EIVLPIATAA FVLALVIAAF LFVRRRVRYA EVREDWEVEF GPHRFSYKEL
401: YQATKGFKNK QLLGTGGFGR VYKGVLAKSN LEIAVKRVSH DSKQGMKEFI AEVVSIGHLR HRNLVQLLGY CRRKGELLLV YDYMSNGSLD KYLYDKTKPV
501: LDWGQRFQII KGVASGLLYL HEDWEQVVIH RDIKASNVLL DGEMNGRLGD FGLARLYDHG VDPQTTHVVG TMGYLAPELV RTGKATPVTD VFAFGVFVLE
601: VTCGRRPLGC IAPDDQNVLL DWVQEHERRH AALDTVDARL CGKYDADEAR LALKLGLMCA HPLPDARPTM RQVTQYLDGD APMPEVAPTM VSYTMLALMQ
701: NDGFDSFAMS FPSTVTSTAS PMSADVSAVS GLSGGR

Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)

001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR

Arabidopsis Description

LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.