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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 10
  • golgi 5
  • plastid 1
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:secretory
EpiLoc:plasma membrane
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:cytosol, nucleus, plasma membrane, plastid
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
 plasma membrane: 18260611
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0267900-01
Os01t0279300-01
Os01t0810300-01
Os03t0319300-01
Os03t0743500-02
Os05t0491000-01
Os05t0491100-01
Os07t0687200-02
Os12t0603800-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 Os01t0267900-01 AT2G41090.1 17360592
AT4G02410.1 Os01t0279300-01 AT2G41090.1 17360592
AT4G02410.1 Os01t0810300-01 AT2G41090.1 17360592
AT4G02410.1 Os03t0319300-01 AT2G41090.1 17360592
AT4G02410.1 Os05t0491000-01 AT2G41090.1 17360592
AT4G02410.1 Os05t0491100-01 AT2G41090.1 17360592
AT4G02410.1 Os07t0687200-02 AT2G41090.1 17360592
AT4G02410.1 Os12t0603800-00 AT2G41090.1 17360592
AT4G02410.1 Os01t0267900-01 AT2G41100.1 17360592
AT4G02410.1 Os01t0279300-01 AT2G41100.1 17360592
AT4G02410.1 Os01t0810300-01 AT2G41100.1 17360592
AT4G02410.1 Os03t0319300-01 AT2G41100.1 17360592
AT4G02410.1 Os05t0491000-01 AT2G41100.1 17360592
AT4G02410.1 Os05t0491100-01 AT2G41100.1 17360592
AT4G02410.1 Os07t0687200-02 AT2G41100.1 17360592
AT4G02410.1 Os12t0603800-00 AT2G41100.1 17360592
AT4G02410.1 Os03t0743500-02 AT4G14640.1 17360592
AT4G02410.1 Os01t0267900-01 AT5G21274.1 17360592
AT4G02410.1 Os01t0279300-01 AT5G21274.1 17360592
AT4G02410.1 Os01t0810300-01 AT5G21274.1 17360592
AT4G02410.1 Os03t0319300-01 AT5G21274.1 17360592
AT4G02410.1 Os05t0491000-01 AT5G21274.1 17360592
AT4G02410.1 Os05t0491100-01 AT5G21274.1 17360592
AT4G02410.1 Os07t0687200-02 AT5G21274.1 17360592
AT4G02410.1 Os12t0603800-00 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU2Hr1G091360.1 Barley plasma membrane 87.42 82.25
EES12555 Sorghum plasma membrane 86.79 81.78
TraesCS2D01G368000.1 Wheat plasma membrane 86.95 81.08
TraesCS2A01G371700.1 Wheat plasma membrane 86.16 80.95
Zm00001d025920_P001 Maize plasma membrane 83.02 78.92
Os02t0640500-01 Rice plasma membrane 67.45 63.65
Os07t0130100-01 Rice plasma membrane 61.79 57.71
Os07t0575600-02 Rice plasma membrane 62.74 57.25
Os10t0441900-01 Rice plasma membrane 61.79 56.87
Os03t0772600-01 Rice plasma membrane 41.98 56.81
CDX91325 Canola cytosol, mitochondrion 23.43 56.44
Os07t0283125-00 Rice plasma membrane 58.96 56.05
Os10t0442000-01 Rice plasma membrane 62.26 56.01
Os07t0130200-01 Rice plasma membrane 59.75 55.23
KRH49145 Soybean plasma membrane 57.86 55.17
Os04t0531500-01 Rice plasma membrane 63.52 54.89
KRH00016 Soybean plasma membrane 57.39 54.72
PGSC0003DMT400022983 Potato plasma membrane 57.08 54.59
Os07t0283050-00 Rice plasma membrane 57.08 54.26
Os09t0268000-00 Rice plasma membrane 56.6 53.89
VIT_08s0007g00810.t01 Wine grape plasma membrane 56.6 52.94
Bra005168.1-P Field mustard plasma membrane 55.82 52.75
AT2G37710.1 Thale cress plasma membrane 55.82 52.59
Os07t0130800-01 Rice plasma membrane 57.86 52.57
CDX91384 Canola plasma membrane 55.35 52.3
PGSC0003DMT400052365 Potato plasma membrane 54.72 52.25
Os07t0130400-01 Rice plasma membrane 56.6 51.87
Os07t0131500-00 Rice plasma membrane 51.57 51.57
PGSC0003DMT400022743 Potato plasma membrane 53.62 51.05
Solyc09g011990.1.1 Tomato plasma membrane 53.62 51.05
CDY65835 Canola plasma membrane 52.67 50.83
Solyc09g012000.1.1 Tomato plasma membrane 53.3 50.67
CDY21254 Canola plasma membrane 51.42 50.23
AT3G53810.1 Thale cress plasma membrane 53.3 50.07
CDY55369 Canola plasma membrane 52.67 50.0
Os02t0298200-01 Rice plasma membrane 46.38 49.92
Os02t0299000-00 Rice mitochondrion 46.23 49.75
Bra035326.1-P Field mustard plasma membrane 52.36 49.63
Bra018553.1-P Field mustard plasma membrane 51.89 49.48
AT4G02420.1 Thale cress plasma membrane 51.89 49.33
CDX90939 Canola plasma membrane 50.79 48.87
AT4G02410.1 Thale cress plasma membrane 51.73 48.81
CDY02414 Canola plasma membrane 45.13 48.64
Bra000881.1-P Field mustard plasma membrane 50.31 47.41
Os09t0268100-00 Rice plasma membrane 35.85 47.11
Bra000880.1-P Field mustard plasma membrane 49.37 46.24
Os03t0823000-01 Rice plasma membrane 50.0 45.36
Os07t0575750-00 Rice plasma membrane 48.9 44.94
Os12t0574700-00 Rice plasma membrane 47.48 44.02
Os07t0129800-00 Rice plasma membrane, vacuole 58.49 43.92
Os10t0533800-00 Rice plasma membrane 47.64 43.41
Solyc09g011060.2.1 Tomato plasma membrane 52.99 40.5
Os07t0131375-00 Rice plasma membrane 33.8 35.71
GSMUA_Achr9P09920_001 Banana plasma membrane 47.01 31.54
GSMUA_Achr9P10000_001 Banana cytosol 44.34 14.71
Os07t0575700-01 Rice plasma membrane 10.06 9.54
Os07t0129900-00 Rice plasma membrane 0.16 0.15
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20ProteinID:BAF15310.1ProteinID:BAS90216.1
InterPro:ConA-like_dom_sfGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016740GO:GO:0019538
GO:GO:0030246InterPro:IPR000719InterPro:Kinase-like_dom_sfInterPro:Legume_lectin_domEnsemblPlantsGene:Os04g0531400EnsemblPlants:Os04t0531400-01
PFAM:PF00069PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PFscan:PS51257
PANTHER:PTHR27007PANTHER:PTHR27007:SF33InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSUniProt:Q0JBH7SMART:SM00220
SUPFAM:SSF49899SUPFAM:SSF56112InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0000DD91B8
SEG:seg:::::
Description
Salt Intolerance 2Similar to Lectin-like receptor kinase 7;2. (Os04t0531400-01)
Coordinates
chr4:-:26572754..26575020
Molecular Weight (calculated)
70058.3 Da
IEP (calculated)
7.981
GRAVY (calculated)
-0.035
Length
636 amino acids
Sequence
(BLAST)
001: MVLPKPEMPF FVLLLFLGLG CLRPAAATDE RFVFNGFTGA NLSFDGMATV TSNGLLMLTN GTNQLKGHAF FPSPLQFQRG PNSTAMQSFS TAFVNSANNG
101: NATNHLFAVE FDTILNSEFN DMSGNHVGID VNGLNSVDAD NAGYYDDGTG DFKNMSLVSR RPMQVWVDFD GQTMQVNVTM APLEVARPKK PLLSKIVNIS
201: SVIDDTAYVG FSSATGILFC RHYVLGWSFK MNGAAPALNI SSLPSLPVTF PKPRSKTLEI VLPIASAVLV FAVAAAVFVF MRRRRMFSEL KEEWEVTFGP
301: HRFSYKDLFH ATDGFSDKRL LGIGGFGRVY RGVLPSSKAE VAVKKVAHGS RQGMREFVAE VVSIGRLRHR NLVQLLGYCR RKGELLLVYD YMPNGSLDKQ
401: LYDQGKITLR WAQRFRIIRG VASGLLYLHE DWEQVVVHRD IKASNVLLDA DMNGRLGDFG LARLYDHGTD PHTTHVVGTM GYLAPELGHT GKASKASDVF
501: AFGAFMLEVA CGRKPVAQDA RDNRVVLVDW VLDRWRAGAI TDTVDPRLHG DFVESEASLV LRLGLLCSHP LPGARPGTRQ LVQYLEGDVP LPELSPTYQS
601: FNMLALMQDQ GFDPYVMSYP MTSTSAGTFS DLSGGR
Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)
001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR
Arabidopsis Description
LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.