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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 9
  • golgi 5
  • nucleus 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, secretory
BaCelLo:secretory
EpiLoc:nucleus
iPSORT:secretory
MultiLoc:plasma membrane
Plant-mPloc:cytosol, nucleus, plasma membrane
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 EES01631 AT2G41090.1 17360592
AT4G02410.1 EES09201 AT2G41090.1 17360592
AT4G02410.1 EES16322 AT2G41090.1 17360592
AT4G02410.1 OQU78227 AT2G41090.1 17360592
AT4G02410.1 EES01631 AT2G41100.1 17360592
AT4G02410.1 EES09201 AT2G41100.1 17360592
AT4G02410.1 EES16322 AT2G41100.1 17360592
AT4G02410.1 OQU78227 AT2G41100.1 17360592
AT4G02410.1 KXG37587 AT4G14640.1 17360592
AT4G02410.1 KXG37588 AT4G14640.1 17360592
AT4G02410.1 EES01631 AT5G21274.1 17360592
AT4G02410.1 EES09201 AT5G21274.1 17360592
AT4G02410.1 EES16322 AT5G21274.1 17360592
AT4G02410.1 OQU78227 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d025920_P001 Maize plasma membrane 90.07 90.88
Os04t0531400-01 Rice plasma membrane 81.78 86.79
HORVU2Hr1G091360.1 Barley plasma membrane 83.85 83.73
TraesCS2A01G371700.1 Wheat plasma membrane 83.11 82.87
TraesCS2D01G368000.1 Wheat plasma membrane 83.56 82.7
EES07549 Sorghum cytosol, plasma membrane, plastid 63.11 65.14
OQU90148 Sorghum plasma membrane 65.19 64.52
OQU88393 Sorghum cytosol 44.89 63.12
EER93380 Sorghum plasma membrane 61.33 60.61
EER97934 Sorghum plasma membrane 60.59 59.71
OQU82016 Sorghum plasma membrane 60.59 59.19
OQU76295 Sorghum cytosol, nucleus, plastid 49.48 58.91
EER99594 Sorghum plasma membrane 59.41 58.63
EER98367 Sorghum plasma membrane 58.07 58.42
OQU76282 Sorghum plasma membrane 54.81 58.27
KXG38456 Sorghum plasma membrane 59.26 58.22
EER90817 Sorghum plasma membrane 55.41 58.07
EER94173 Sorghum plasma membrane 60.3 57.98
EER95837 Sorghum plasma membrane 57.33 57.59
CDX91325 Canola cytosol, mitochondrion 22.52 57.58
OQU76281 Sorghum plasma membrane 58.37 57.27
KXG24408 Sorghum plasma membrane 56.0 57.01
OQU78436 Sorghum cytosol 48.0 56.15
KXG34333 Sorghum plasma membrane 59.41 55.93
EER97932 Sorghum plasma membrane 57.63 55.89
KXG24409 Sorghum plasma membrane 54.96 55.54
EER93379 Sorghum plasma membrane 55.85 55.52
PGSC0003DMT400022983 Potato plasma membrane 54.37 55.19
OQU76297 Sorghum plasma membrane 47.85 55.03
OQU88865 Sorghum plasma membrane 46.67 54.97
KXG22552 Sorghum plasma membrane 51.26 54.92
KRH49145 Soybean plasma membrane 53.78 54.42
KRH00016 Soybean plasma membrane 53.48 54.12
KXG19863 Sorghum plasma membrane 53.48 54.04
OQU84848 Sorghum plasma membrane 56.59 54.03
VIT_08s0007g00810.t01 Wine grape plasma membrane 54.37 53.97
AT2G37710.1 Thale cress plasma membrane 53.63 53.63
Bra005168.1-P Field mustard plasma membrane 52.89 53.05
CDX91384 Canola plasma membrane 52.89 53.05
PGSC0003DMT400052365 Potato plasma membrane 52.3 53.0
CDY65835 Canola plasma membrane 51.11 52.35
CDY21254 Canola plasma membrane 50.37 52.23
Solyc09g012000.1.1 Tomato plasma membrane 51.56 52.02
Solyc09g011990.1.1 Tomato plasma membrane 51.26 51.8
Bra035326.1-P Field mustard plasma membrane 51.41 51.71
AT3G53810.1 Thale cress plasma membrane 51.85 51.7
PGSC0003DMT400022743 Potato plasma membrane 51.11 51.65
CDY55369 Canola plasma membrane 51.26 51.64
CDY02414 Canola plasma membrane 44.74 51.19
Bra018553.1-P Field mustard plasma membrane 50.37 50.97
OQU88397 Sorghum cytosol, plasma membrane, plastid 49.33 50.76
AT4G02410.1 Thale cress plasma membrane 50.37 50.45
AT4G02420.1 Thale cress plasma membrane 49.93 50.37
CDX90939 Canola plasma membrane 49.19 50.23
Bra000881.1-P Field mustard plasma membrane 49.48 49.48
Bra000880.1-P Field mustard plasma membrane 47.26 46.98
EES17246 Sorghum plasma membrane 46.96 45.74
KXG37241 Sorghum mitochondrion 48.3 45.22
EER94566 Sorghum plasma membrane 45.33 45.2
Solyc09g011060.2.1 Tomato plasma membrane 50.37 40.87
GSMUA_Achr9P09920_001 Banana plasma membrane 43.11 30.7
OQU92890 Sorghum plasma membrane 59.85 30.4
GSMUA_Achr9P10000_001 Banana cytosol 43.26 15.23
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20EntrezGene:8082882UniProt:C5YCW1
InterPro:ConA-like_dom_sfEnsemblPlants:EES12555ProteinID:EES12555ProteinID:EES12555.1GO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0006464
GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016301GO:GO:0016740GO:GO:0019538GO:GO:0030246InterPro:IPR000719InterPro:Kinase-like_dom_sf
InterPro:Legume_lectin_domPFAM:PF00069PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011
PANTHER:PTHR27007PANTHER:PTHR27007:SF33InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220EnsemblPlantsGene:SORBI_3006G158200
SUPFAM:SSF49899SUPFAM:SSF56112unigene:Sbi.934InterPro:Ser/Thr_kinase_ASSignalP:SignalP-noTMTMHMM:TMhelix
UniParc:UPI0001A87444RefSeq:XP_002448227.1SEG:seg:::
Description
hypothetical protein
Coordinates
chr6:-:51672568..51674595
Molecular Weight (calculated)
73823.9 Da
IEP (calculated)
7.785
GRAVY (calculated)
0.021
Length
675 amino acids
Sequence
(BLAST)
001: MPPPHLIRLL FLGLGGVLLP AAWAADEQFV FDGFKGANLS FDGMATVTPD GLLMLTNGTN QLKGHAFYPA PLRLHRAPNG STATAAMQSF STAFVIGIIG
101: AYEDLSSHGM AFVVAKSSNF TSALPGQFMG LVSSATNGNA TNHLFAVEFD TILNSEFNDM SGNHVGVDVN GLNSVDADNA GYYDDATGAF RNMSLVSRKA
201: MQVWVDFDGQ TMQVNVTMAP LEAVARPKKP LLSTTVNLSS VIDDTAYVGF SSATGILFCR HYVLGWSFKM NGAAPALNIS ALPTLPVTFP KPRSKTLEIV
301: LPIASAVLVF AVAAVVFAFL RRRRMYAEVK EEWEASFGPH RFSYKDLFHA TDGFSDTRLL GIGGFGRVYR GVLASSKMEV AVKKVAHGSR QGMREFVAEV
401: VSIGRLRHRN LVQLLGYCRR KGELLLVYDY MPNGSLDKYL YDQSKITLDW GQRFRILKGV ASGLLYLHED WEKVVVHRDI KASNVLLDRE MNARLGDFGL
501: ARLYDHGTDP HTTHVVGTMG YMAPELGHTG RASKASDVFA FGAFMLEVAC GRKPVVQDAR DNRLVLVDWV LDRWRAGSVT DTVDPRLRGD FVEREASLVL
601: RLGLLCSHPL PGARPGMRQI VQYLDGDAPL PELSPTYQGL NMLSLMQDQG FDPYIMSFPM TSTGTSTISD LSGGR
Best Arabidopsis Sequence Match ( AT2G37710.1 )
(BLAST)
001: MFLKLLTIFF FFFFNLIFQS SSQSLNFAYN NGFNPPTDLS IQGITTVTPN GLLKLTNTTV QKTGHAFYTK PIRFKDSPNG TVSSFSTSFV FAIHSQIAIL
101: SGHGIAFVVA PNASLPYGNP SQYIGLFNLA NNGNETNHVF AVELDTILST EFNDTNDNHV GIDINSLKSV QSSPAGYWDE KGQFKNLTLI SRKPMQVWVD
201: YDGRTNKIDV TMAPFNEDKP TRPLVTAVRD LSSVLLQDMY VGFSSATGSV LSEHYILGWS FGLNEKAPPL ALSRLPKLPR FEPKRISEFY KIGMPLISLF
301: LIFSFIFLVC YIVRRRRKFA EELEEWEKEF GKNRFRFKDL YYATKGFKEK GLLGTGGFGS VYKGVMPGTK LEIAVKRVSH ESRQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNTPEVT LNWKQRIKVI LGVASGLFYL HEEWEQVVIH RDVKASNVLL DGELNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHT RTGRATMATD VFAFGAFLLE VACGRRPIEF QQETDETFLL VDWVFGLWNK GDILAAKDPN MGSECDEKEV EMVLKLGLLC
601: SHSDPRARPS MRQVLHYLRG DAKLPELSPL DLSGSGMMFG VHDGFSELGM SYSSSVFKGF TGGSSIADSQ LSGGR
Arabidopsis Description
LECRK41L-type lectin-domain containing receptor kinase IV.1 [Source:UniProtKB/Swiss-Prot;Acc:O80939]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.