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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, cytosol

Predictor Summary:
  • plasma membrane 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:plasma membrane
MultiLoc:plasma membrane
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G02410.1 HORVU0Hr1G001280.1 AT2G41090.1 17360592
AT4G02410.1 HORVU2Hr1G016740.4 AT2G41090.1 17360592
AT4G02410.1 HORVU3Hr1G038010.1 AT2G41090.1 17360592
AT4G02410.1 HORVU3Hr1G079210.4 AT2G41090.1 17360592
AT4G02410.1 HORVU4Hr1G026290.3 AT2G41090.1 17360592
AT4G02410.1 HORVU5Hr1G014060.1 AT2G41090.1 17360592
AT4G02410.1 HORVU5Hr1G014070.2 AT2G41090.1 17360592
AT4G02410.1 HORVU5Hr1G044710.4 AT2G41090.1 17360592
AT4G02410.1 HORVU0Hr1G001280.1 AT2G41100.1 17360592
AT4G02410.1 HORVU2Hr1G016740.4 AT2G41100.1 17360592
AT4G02410.1 HORVU3Hr1G038010.1 AT2G41100.1 17360592
AT4G02410.1 HORVU3Hr1G079210.4 AT2G41100.1 17360592
AT4G02410.1 HORVU4Hr1G026290.3 AT2G41100.1 17360592
AT4G02410.1 HORVU5Hr1G014060.1 AT2G41100.1 17360592
AT4G02410.1 HORVU5Hr1G014070.2 AT2G41100.1 17360592
AT4G02410.1 HORVU5Hr1G044710.4 AT2G41100.1 17360592
AT4G02410.1 HORVU0Hr1G001280.1 AT5G21274.1 17360592
AT4G02410.1 HORVU2Hr1G016740.4 AT5G21274.1 17360592
AT4G02410.1 HORVU3Hr1G038010.1 AT5G21274.1 17360592
AT4G02410.1 HORVU3Hr1G079210.4 AT5G21274.1 17360592
AT4G02410.1 HORVU4Hr1G026290.3 AT5G21274.1 17360592
AT4G02410.1 HORVU5Hr1G014060.1 AT5G21274.1 17360592
AT4G02410.1 HORVU5Hr1G014070.2 AT5G21274.1 17360592
AT4G02410.1 HORVU5Hr1G044710.4 AT5G21274.1 17360592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G191400.1 Wheat plasma membrane 87.99 92.57
Os07t0130200-01 Rice plasma membrane 71.33 73.4
OQU76281 Sorghum plasma membrane 71.19 73.26
HORVU3Hr1G018500.1 Barley plasma membrane 59.04 61.65
HORVU3Hr1G018610.1 Barley plasma membrane 59.04 61.56
HORVU5Hr1G104840.1 Barley plasma membrane 59.32 61.05
HORVU6Hr1G053120.1 Barley plasma membrane 57.49 60.93
HORVU5Hr1G104850.2 Barley vacuole 51.13 60.84
HORVU6Hr1G025340.4 Barley plasma membrane 61.16 60.81
HORVU3Hr1G018690.1 Barley plasma membrane 56.78 59.47
HORVU7Hr1G000530.1 Barley plasma membrane 57.2 59.04
HORVU5Hr1G098640.1 Barley plasma membrane 56.92 58.92
HORVU6Hr1G025350.1 Barley plasma membrane 56.64 58.63
HORVU1Hr1G009250.16 Barley plasma membrane 57.34 58.17
HORVU7Hr1G019400.2 Barley plasma membrane 55.08 57.95
HORVU7Hr1G028730.4 Barley plasma membrane 55.65 57.27
HORVU2Hr1G091360.1 Barley plasma membrane 54.52 57.1
HORVU7Hr1G000830.1 Barley plasma membrane 55.65 56.61
HORVU2Hr1G037210.1 Barley plasma membrane 54.24 56.55
HORVU1Hr1G037000.1 Barley plasma membrane 52.82 56.24
HORVU2Hr1G037200.1 Barley plasma membrane 53.81 55.14
HORVU2Hr1G120660.8 Barley plasma membrane 53.95 55.12
KRH00016 Soybean plasma membrane 51.27 54.42
KRH49145 Soybean plasma membrane 50.56 53.67
VIT_08s0007g00810.t01 Wine grape plasma membrane 51.27 53.38
PGSC0003DMT400052365 Potato plasma membrane 50.14 53.3
PGSC0003DMT400022983 Potato plasma membrane 49.44 52.63
HORVU7Hr1G019390.1 Barley plasma membrane 52.4 52.55
AT2G37710.1 Thale cress plasma membrane 49.72 52.15
Solyc09g011990.1.1 Tomato plasma membrane 49.15 52.1
AT3G53810.1 Thale cress plasma membrane 49.58 51.85
CDY65835 Canola plasma membrane 48.02 51.59
CDY21254 Canola plasma membrane 47.32 51.46
CDX91325 Canola cytosol, mitochondrion 19.07 51.14
Solyc09g012000.1.1 Tomato plasma membrane 47.88 50.67
CDX91384 Canola plasma membrane 47.6 50.07
Bra005168.1-P Field mustard plasma membrane 47.6 50.07
PGSC0003DMT400022743 Potato plasma membrane 47.18 50.0
Bra035326.1-P Field mustard plasma membrane 47.32 49.93
AT4G02410.1 Thale cress plasma membrane 47.03 49.41
AT4G02420.1 Thale cress plasma membrane 46.61 49.33
Bra000881.1-P Field mustard plasma membrane 46.89 49.19
CDX90939 Canola plasma membrane 45.76 49.02
HORVU2Hr1G014930.1 Barley plastid 51.41 48.99
CDY02414 Canola plasma membrane 40.82 48.98
Bra018553.1-P Field mustard plasma membrane 46.05 48.88
CDY55369 Canola plasma membrane 46.19 48.81
Bra000880.1-P Field mustard plasma membrane 44.49 46.39
HORVU5Hr1G114030.4 Barley plasma membrane 44.77 43.91
HORVU5Hr1G020530.1 Barley plasma membrane 42.94 42.88
Solyc09g011060.2.1 Tomato plasma membrane 47.03 40.02
GSMUA_Achr9P09920_001 Banana plasma membrane 37.85 28.27
GSMUA_Achr9P10000_001 Banana cytosol 40.68 15.02
Protein Annotations
Gene3D:1.10.510.10MapMan:18.4.1.19Gene3D:2.60.120.200Gene3D:3.30.200.20UniProt:A0A287U6S0InterPro:ConA-like_dom_sf
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004672GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0006464GO:GO:0006468GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016301GO:GO:0016740GO:GO:0019538GO:GO:0030246
EnsemblPlantsGene:HORVU6Hr1G053090EnsemblPlants:HORVU6Hr1G053090.1InterPro:IPR000719InterPro:Kinase-like_dom_sfInterPro:Legume_lectin_domPFAM:PF00069
PFAM:PF00139ScanProsite:PS00107ScanProsite:PS00108PFscan:PS50011PANTHER:PTHR27007PANTHER:PTHR27007:SF41
InterPro:Prot_kinase_domInterPro:Protein_kinase_ATP_BSSMART:SM00220SUPFAM:SSF49899SUPFAM:SSF56112InterPro:Ser/Thr_kinase_AS
TMHMM:TMhelixUniParc:UPI000B475B66SEG:seg:::
Description
No Description!
Coordinates
chrchr6H:+:328630264..328632697
Molecular Weight (calculated)
78246.7 Da
IEP (calculated)
7.754
GRAVY (calculated)
-0.064
Length
708 amino acids
Sequence
(BLAST)
001: TSAASVILRE ESSSTPAEHT GSAVTYYTTL SPLMSVMKLI CFFLLGAVGA LELVSSVDDQ FVYSGFAGAG LTLDGSATVT PSGLLELTNG TLQLKGHAFH
101: PAPLRFRELP NGTVRSFSAS FVFGILSAYP DMSAHGIVFV VAPTTDFSTA LASQYLGLVN VQNNGHESNR IFAVELDTLQ QDEFRDINDN HVGVDINGLI
201: SLQSSNAGYY VTGGEKKERF ENLTLISHQA MQVWIEYDAG SNRINVTLAP LGVAKPAKPL MSVTYNLSSV IASTAYVGFS SATGSFDSRH YVLGWSFRMS
301: STSAPAMDMA KLPTLPREIP KARSKVLQVV LPITSAAVVL ALGTVIVLLL RRRRRYTELR EDWEIEFGPH RFPFKDLHRA TQGFNSKNLL GVGGFGRVYR
401: GVLPDCNMDI AVKRVSHDSK QGVKEFIAEV VSLGRLQHRN LVRLLGYCRR KGELLLVYEY MPKGSLDKHL YLYGHQDDDK PTLNWAQRFH IIQGIASGLL
501: YLHEEWEKVV VHRDIKASNV LLDDKMNGRL GDFGLARLYD HGTDPQSTHV VGTIGYIAPE LGRTSKASPL TDVFAFGTFL LEVTCGRRPI FQDARGNQVM
601: LVDWVLDHWR RDSLAHAVDT KLRGDYNVDE ACLVLQLGLS CSHPFVNARP NMRQVMQYLS NEVPLPQLRS TKMSFQTLAM MQNDGFDSYI QSSYSSSRAS
701: FSTTSVIS
Best Arabidopsis Sequence Match ( AT3G53810.1 )
(BLAST)
001: MFVKLKLIFF FFLLCQIMIS SSQNLNFTYN GFHPPLTDIS LQGLATVTPN GLLKLTNTSV QKTGHAFCTE RIRFKDSQNG NVSSFSTTFV FAIHSQIPTL
101: SGHGIAFVVA PTLGLPFALP SQYIGLFNIS NNGNDTNHIF AVEFDTIQSS EFGDPNDNHV GIDLNGLRSA NYSTAGYRDD HDKFQNLSLI SRKRIQVWID
201: YDNRSHRIDV TVAPFDSDKP RKPLVSYVRD LSSILLEDMY VGFSSATGSV LSEHFLVGWS FRLNGEAPML SLSKLPKLPR FEPRRISEFY KIGMPLISLS
301: LIFSIIFLAF YIVRRKKKYE EELDDWETEF GKNRFRFKEL YHATKGFKEK DLLGSGGFGR VYRGILPTTK LEVAVKRVSH DSKQGMKEFV AEIVSIGRMS
401: HRNLVPLLGY CRRRGELLLV YDYMPNGSLD KYLYNNPETT LDWKQRSTII KGVASGLFYL HEEWEQVVIH RDVKASNVLL DADFNGRLGD FGLARLYDHG
501: SDPQTTHVVG TLGYLAPEHS RTGRATTTTD VYAFGAFLLE VVSGRRPIEF HSASDDTFLL VEWVFSLWLR GNIMEAKDPK LGSSGYDLEE VEMVLKLGLL
601: CSHSDPRARP SMRQVLQYLR GDMALPELTP LDLSAGSVMN LGGRDGFSGI AMTDFSTVFK GFTGGSSIAD SLLSGGR
Arabidopsis Description
LECRK42L-type lectin-domain containing receptor kinase IV.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M345]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.