Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr6P03140_001 | |
| GSMUA_Achr6P22810_001 | |
| GSMUA_Achr7P04880_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0666100-00 | Rice | extracellular, golgi | 71.85 | 68.7 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 46.03 | 65.0 |
| Os02t0326600-01 | Rice | cytosol, plasma membrane | 54.58 | 63.45 |
| KRH31013 | Soybean | cytosol | 67.1 | 61.57 |
| TraesCS5A01G361300.1 | Wheat | cytosol | 67.18 | 60.69 |
| KXG37878 | Sorghum | cytosol | 73.83 | 60.6 |
| Zm00001d013590_P001 | Maize | mitochondrion | 73.4 | 60.07 |
| PGSC0003DMT400072858 | Potato | cytosol | 75.13 | 60.04 |
| Solyc05g013040.2.1 | Tomato | cytosol | 74.96 | 59.9 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 75.99 | 59.86 |
| Solyc04g005560.2.1 | Tomato | nucleus | 74.53 | 59.81 |
| TraesCS4D01G016900.1 | Wheat | cytosol | 72.97 | 59.76 |
| TraesCS4A01G294900.1 | Wheat | cytosol | 72.71 | 59.46 |
| TraesCS4B01G018700.1 | Wheat | cytosol | 72.63 | 59.43 |
| KRG97867 | Soybean | cytosol | 75.47 | 59.33 |
| AT1G13980.1 | Thale cress | cytosol | 74.18 | 59.2 |
| Bra019694.1-P | Field mustard | cytosol | 73.58 | 58.84 |
| CDX98140 | Canola | cytosol | 73.58 | 58.84 |
| CDY36422 | Canola | cytosol | 73.49 | 58.73 |
| HORVU4Hr1G002880.3 | Barley | cytosol | 72.11 | 58.72 |
| HORVU3Hr1G017750.4 | Barley | cytosol | 49.91 | 58.5 |
| HORVU5Hr1G088970.4 | Barley | plastid | 65.37 | 57.61 |
| TraesCS5D01G370200.1 | Wheat | cytosol | 67.1 | 56.67 |
| EER91946 | Sorghum | plastid | 67.96 | 55.19 |
| TraesCS5B01G363900.1 | Wheat | cytosol, plasma membrane | 67.1 | 54.95 |
| KRH73064 | Soybean | cytosol | 69.78 | 54.89 |
| KRH15072 | Soybean | cytosol | 69.86 | 54.74 |
| KRG97865 | Soybean | cytosol | 69.34 | 54.51 |
| Zm00001d029910_P001 | Maize | plastid | 67.01 | 54.42 |
| Zm00001d047092_P001 | Maize | mitochondrion, plastid | 66.67 | 54.29 |
| KRH31014 | Soybean | nucleus | 68.39 | 53.77 |
| TraesCS3A01G098600.1 | Wheat | cytosol, plastid | 63.47 | 52.99 |
| TraesCS3B01G114200.1 | Wheat | plastid | 62.35 | 51.35 |
| GSMUA_Achr1P23070_001 | Banana | cytosol, nucleus, peroxisome | 30.74 | 34.97 |
| CDY69502 | Canola | cytosol | 4.75 | 20.75 |
| GSMUA_Achr5P18830_001 | Banana | cytosol | 23.49 | 15.89 |
| GSMUA_Achr8P19420_001 | Banana | cytosol | 23.75 | 15.79 |
| GSMUA_Achr8P34520_001 | Banana | cytosol | 3.02 | 15.7 |
| GSMUA_Achr1P09290_001 | Banana | mitochondrion | 22.28 | 15.5 |
| GSMUA_Achr4P27650_001 | Banana | cytosol, extracellular, plastid | 20.03 | 12.92 |
| GSMUA_Achr2P14140_001 | Banana | cytosol, extracellular, nucleus | 19.0 | 12.49 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | GO:GO:0003674 | GO:GO:0005086 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0032012 |
| GO:GO:0065009 | EnsemblPlantsGene:GSMUA_Achr6G22810_001 | EnsemblPlants:GSMUA_Achr6P22810_001 | EnsemblPlants:GSMUA_Achr6T22810_001 | InterPro:IPR000904 | InterPro:IPR023394 |
| UniProt:M0T9C9 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF3 |
| SMART:SM00222 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf |
| SignalP:SignalP-noTM | UniParc:UPI00029560A4 | SEG:seg | : | : | : |
Description
Pattern formation protein EMB30 [Source:GMGC_GENE;Acc:GSMUA_Achr6G22810_001]
Coordinates
chr6:-:21281647..21286214
Molecular Weight (calculated)
130962.0 Da
IEP (calculated)
6.091
GRAVY (calculated)
-0.033
Length
1158 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKILQVLLAI MRSRASAVLS NQHVCTIVNT CFRVVHQAGT KGELLQRFAR QTMHELIRCI FSHLPNVKDG GRPPSVKPEA PIGAEIMVEP YGIPCMLEIF
0101: HFLCSLLNVA DQIGISPAPN QIALDEDVPL FALGMINSVI ELGGASICRH PKLLSLIQDE LFRNLMQLGL SVSPLILSMV CSIVLNLYRH LRTELKLQLE
0201: AFFSCVILRV TQSRYGASYH QQEVAMEALV DFCRQTTFMA EMYANFDCDI SCSNVFEELA NLLSKSAFPV NCPLSSTHVL ALDGLIAEYA SFWTMKCEDY
0301: SDPDQWVKFV HRMKNIKRKL MIVADHFNRD PKKGLEFLQG THLLPENLDP NSVACFFRYT TGLDKNLVGD FLGNHDEFCV QVLHEFARTF DFKDMNMDTA
0401: LRLFLDTFRL PGESQKIQRV LEAFSERYFE QSPQILVDKD AALILAYSLI MLNTDQHNVQ VKKKMTEEDF IRNNRRINGG NDLPREFLSD LYHSICRNEI
0501: RTAPEQGFGF LEMYPSRWVD LMLKSKTASP YTVCDSRPFL DREMFSVMSG PMIAAISVVF DYAEHEEIFL TCVDGFLAVA KISAHHHLEE VLDDSVVSLC
0601: RFTTLLDSSF IEEPVTIFVD DTKARLALET VFSITNTYGD CIRTGWRNIL DCILRLHKLG LLPAPVASDA DDDSESSPDS IHGKPVPSPL STSHVQIMGT
0701: RKSSGLIGRF SQLLYFDTEE PSLEPNEQQL AAHQRTLQII QECHIDSIFT ESKFLHADSL MQITRALIAA GHPQKITSSP DDEDMAVFCL ELLIAITLNN
0801: RDRIGLLWQD VYEHIANIVQ STVMPCALVE KAVFGLLRIC QRLLPYKENL ADELLRSLQL VLKLDARVAD AYCENITQEI TRLVKANATH LKSQMGWRTI
0901: ASLLSITARH PEASEVGFEA LIFIMSEGAH ISPANYVLLI EASRHFAESR VGQTDRSVRA LDLMAESINC LARWSRETRD AGEEAEKISE GIREMWLRLV
1001: QALRKISLDQ REVNHSPKDY RNMEGTFLHA VKLLSKVFLQ LLQQLSGQSS FCKLWLGVIG RMEKYMKIKV RGRKSEKLQE LIPELLKNIL FVMKSKGILA
1101: KGSIVGGDNL WELTWVHVNN IAPYLQSEVF PNQEMEQLHL GAQTDNSSPR LLAEPSVG
0101: HFLCSLLNVA DQIGISPAPN QIALDEDVPL FALGMINSVI ELGGASICRH PKLLSLIQDE LFRNLMQLGL SVSPLILSMV CSIVLNLYRH LRTELKLQLE
0201: AFFSCVILRV TQSRYGASYH QQEVAMEALV DFCRQTTFMA EMYANFDCDI SCSNVFEELA NLLSKSAFPV NCPLSSTHVL ALDGLIAEYA SFWTMKCEDY
0301: SDPDQWVKFV HRMKNIKRKL MIVADHFNRD PKKGLEFLQG THLLPENLDP NSVACFFRYT TGLDKNLVGD FLGNHDEFCV QVLHEFARTF DFKDMNMDTA
0401: LRLFLDTFRL PGESQKIQRV LEAFSERYFE QSPQILVDKD AALILAYSLI MLNTDQHNVQ VKKKMTEEDF IRNNRRINGG NDLPREFLSD LYHSICRNEI
0501: RTAPEQGFGF LEMYPSRWVD LMLKSKTASP YTVCDSRPFL DREMFSVMSG PMIAAISVVF DYAEHEEIFL TCVDGFLAVA KISAHHHLEE VLDDSVVSLC
0601: RFTTLLDSSF IEEPVTIFVD DTKARLALET VFSITNTYGD CIRTGWRNIL DCILRLHKLG LLPAPVASDA DDDSESSPDS IHGKPVPSPL STSHVQIMGT
0701: RKSSGLIGRF SQLLYFDTEE PSLEPNEQQL AAHQRTLQII QECHIDSIFT ESKFLHADSL MQITRALIAA GHPQKITSSP DDEDMAVFCL ELLIAITLNN
0801: RDRIGLLWQD VYEHIANIVQ STVMPCALVE KAVFGLLRIC QRLLPYKENL ADELLRSLQL VLKLDARVAD AYCENITQEI TRLVKANATH LKSQMGWRTI
0901: ASLLSITARH PEASEVGFEA LIFIMSEGAH ISPANYVLLI EASRHFAESR VGQTDRSVRA LDLMAESINC LARWSRETRD AGEEAEKISE GIREMWLRLV
1001: QALRKISLDQ REVNHSPKDY RNMEGTFLHA VKLLSKVFLQ LLQQLSGQSS FCKLWLGVIG RMEKYMKIKV RGRKSEKLQE LIPELLKNIL FVMKSKGILA
1101: KGSIVGGDNL WELTWVHVNN IAPYLQSEVF PNQEMEQLHL GAQTDNSSPR LLAEPSVG
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.