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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400072858

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13980.1 PGSC0003DMT400072858 AT1G13980.1 10715321
AT1G13980.1 PGSC0003DMT400072858 AT1G13980.1 18203920
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g013040.2.1 Tomato cytosol 98.34 98.34
KRH31013 Soybean cytosol 72.33 83.04
VIT_02s0012g01790.t01 Wine grape cytosol 83.64 82.45
KRG97867 Soybean cytosol 81.99 80.65
AT1G13980.1 Thale cress cytosol 80.54 80.43
CDY36422 Canola cytosol 79.37 79.37
CDX98140 Canola cytosol 79.3 79.35
Bra019694.1-P Field mustard cytosol 79.23 79.28
GSMUA_Achr6P22810_001 Banana golgi 60.04 75.13
GSMUA_Achr6P03140_001 Banana cytosol, nucleus, plastid 41.75 73.78
Os03t0666100-00 Rice extracellular, golgi 61.42 73.49
KRH15072 Soybean cytosol 73.64 72.19
KRH73064 Soybean cytosol 73.15 72.01
KRG97865 Soybean cytosol 71.7 70.54
CDY69502 Canola cytosol 12.84 70.19
Zm00001d013590_P001 Maize mitochondrion 68.12 69.75
KXG37878 Sorghum cytosol 67.56 69.38
KRH31014 Soybean nucleus 70.46 69.31
TraesCS4D01G016900.1 Wheat cytosol 66.94 68.6
TraesCS4B01G018700.1 Wheat cytosol 66.74 68.34
TraesCS4A01G294900.1 Wheat cytosol 66.67 68.22
PGSC0003DMT400003631 Potato cytosol 65.01 66.48
Os02t0326600-01 Rice cytosol, plasma membrane 45.13 65.66
TraesCS5A01G361300.1 Wheat cytosol 57.21 64.66
TraesCS5D01G370200.1 Wheat cytosol 59.83 63.24
EER91946 Sorghum plastid 62.11 63.11
HORVU4Hr1G002880.3 Barley cytosol 61.84 63.01
TraesCS5B01G363900.1 Wheat cytosol, plasma membrane 61.35 62.87
Zm00001d029910_P001 Maize plastid 61.63 62.62
Zm00001d047092_P001 Maize mitochondrion, plastid 61.42 62.59
HORVU5Hr1G088970.4 Barley plastid 55.69 61.42
HORVU3Hr1G017750.4 Barley cytosol 41.82 61.34
TraesCS3A01G098600.1 Wheat cytosol, plastid 57.42 59.99
TraesCS3B01G114200.1 Wheat plastid 57.7 59.46
PGSC0003DMT400019795 Potato cytosol 39.41 41.35
PGSC0003DMT400033251 Potato cytosol 23.19 18.9
Protein Annotations
Gene3D:1.10.1000.11Gene3D:1.10.220.20EntrezGene:102584509MapMan:22.3.3.1GO:GO:0000003GO:GO:0000911
GO:GO:0001736GO:GO:0003674GO:GO:0005086GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005768GO:GO:0005886GO:GO:0006810
GO:GO:0006897GO:GO:0007049GO:GO:0007154GO:GO:0007155GO:GO:0007165GO:GO:0007275
GO:GO:0008150GO:GO:0009605GO:GO:0009606GO:GO:0009653GO:GO:0009790GO:GO:0009791
GO:GO:0009793GO:GO:0009826GO:GO:0009880GO:GO:0009942GO:GO:0009987GO:GO:0010087
GO:GO:0010274GO:GO:0010311GO:GO:0010540GO:GO:0016020GO:GO:0016043GO:GO:0016049
GO:GO:0016192GO:GO:0030154GO:GO:0032012GO:GO:0032509GO:GO:0040007GO:GO:0042802
GO:GO:0042803GO:GO:0048765GO:GO:0065009GO:GO:0071555InterPro:IPR000904InterPro:IPR023394
UniProt:M1CR33PFAM:PF01369PFAM:PF12783EnsemblPlantsGene:PGSC0003DMG400028343PGSC:PGSC0003DMG400028343EnsemblPlants:PGSC0003DMT400072858
PFscan:PS50190PANTHER:PTHR44190PANTHER:PTHR44190:SF1SMART:SM00222SUPFAM:SSF48425InterPro:Sec7_C_sf
InterPro:Sec7_NInterPro:Sec7_domInterPro:Sec7_dom_sfUniParc:UPI0002951A5DRefSeq:XP_006348742.1RefSeq:XP_006348743.1
RefSeq:XP_006348744.1RefSeq:XP_006348745.1RefSeq:XP_015164825.1RefSeq:XP_015164826.1SEG:seg:
Description
Pattern formation protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028343]
Coordinates
chr5:-:99118..106936
Molecular Weight (calculated)
161843.0 Da
IEP (calculated)
5.528
GRAVY (calculated)
-0.054
Length
1449 amino acids
Sequence
(BLAST)
0001: MGRLRPQSSI KAIEEEPEDC ETTSSNKTAI ACMINSEVSA VLAVMRRNVR WGGRYVSGDD QLEHSLIQSL KTLRKQIFSW QHSGQTISPA LYLQPFLDVI
0101: RSDETGAPIT GVALSSVFKI LTLDILDLDA VNIEDAMHSV VDAVTSCRFE VTDPASEEVV LMKILQVLLA CMRSKTSVVL SNQHVCTIVN TCFRVVHQAG
0201: AKSEVLQRIA RHTMHELVKC IFAHLPEVDN TQHSIVRQHG SSKNEVAGID NEYSLSSKSE NGSGPSEYDS LPPSGGFTSA STGLLSSVTE EGMVMGDNGK
0301: DSVPYDLHLM TEPYGVPCMV EIFHFLCSLL NVVEHVGMGP RVNTMAFDED VPLFALGLIN SAIELGGPAI CSHPRLLSLV QDGLFRNLMQ FGLSMSPLIL
0401: SMVCSIVLNL YQHLRTELKL QLEAFFSCVV LRLAQSRYGA SYQQQEVAME ALVDFCRQKS FMVEMYANLD CDITCSNIFE ELANLLSKSA FPVNSPLSSM
0501: HILALDGLIA VIQGMAERIG NGSYSSEYTP INLEEYSPFW MVKCENYSDP DHWVPFVRRR KYIKRRLMIG ADHFNRDPKK GLEFLQGTHL LPEKLDPQSV
0601: ACFFRFTAGL DKNLVGDFLG NHDEFCVQVL HEFAGTFDFQ DMNLDTALRL FLETFRLPGE SQKIARVLEA FSERYYEQSP QILANKDAAL LLSYSIIMLN
0701: TDQHNVQVKK KMTEEDFIRN NRHINGGNDL PREFLSELYH SICNNEIRTT PEQGAGFAEM NPSRWIDLMH KSKKTPPYIM CDSKAYLDHD MFAIMSGPTI
0801: AAISVVFDHA EHEDVYQTCI DGFLAVAKIS ACHHLEDVLD DLVVSLCKFT TLLNPSLVEE PVLAFGDDAK ARKATVTVFT IANKCGDFIR TGWRNILDCI
0901: LRLHKLGLLP ARVASDAADD SEASSDPGHG KPLPNSLSAA HMQSLGTPRR SSGLMGRFSQ LLSIDTEEPR SQPTEQQLAA HQRTLQTIQK CQIDTIFTES
1001: KFLLADSLLQ LARALIWAAG RPQKGSSSPE DEDTAVFCLE LLIAITLNNR DRIALLWQGV YEHIAHIVHS TIMPCALIEK AVFGLLRICQ RLLPYKENLA
1101: DDLLRSLQLV TKLDARVTDA YCEQITQEVS RLVRANASHI RSQMGWRTIT QLLSITARHP EASEAGFDVL GFIMSDGSHL SPANFVLCID AARNFAESRV
1201: GPADRPIRAV DLMAGSAACL ACWSKDTREA MAEAEALKLS QDIGEMWLRL VQGLRKVCLD QREVRNHALS SLQMCLTGVD EMYLSHGLWL QCFDIVIFTM
1301: LDDLIELTSQ KDYRNMEETL ILALKLLTKV FLQLLHELSQ LTTFCKLWLG VLNRMEKYMK VKVRGKKSEK LQELVPELLK NTLVVMKSKG VLVQRSALGG
1401: DSLWELTWLH VNNIVPSLQA EVFPENESGH VESDQTDVGE TAYDVTDPS
Best Arabidopsis Sequence Match ( AT1G13980.1 )
(BLAST)
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.