Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G016900.1 | Wheat | cytosol | 98.16 | 98.23 |
| TraesCS4A01G294900.1 | Wheat | cytosol | 97.1 | 97.03 |
| Os03t0666100-00 | Rice | extracellular, golgi | 76.47 | 89.35 |
| KXG37878 | Sorghum | cytosol | 87.63 | 87.88 |
| Zm00001d013590_P001 | Maize | mitochondrion | 86.71 | 86.71 |
| HORVU4Hr1G002880.3 | Barley | cytosol | 84.95 | 84.53 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 59.43 | 72.63 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 70.04 | 67.42 |
| KRH31013 | Soybean | cytosol | 60.07 | 67.35 |
| PGSC0003DMT400072858 | Potato | cytosol | 68.34 | 66.74 |
| Solyc04g005560.2.1 | Tomato | nucleus | 67.92 | 66.6 |
| KRG97867 | Soybean | cytosol | 69.26 | 66.53 |
| AT1G13980.1 | Thale cress | cytosol | 67.99 | 66.3 |
| Solyc05g013040.2.1 | Tomato | cytosol | 67.84 | 66.25 |
| Bra019694.1-P | Field mustard | cytosol | 67.42 | 65.88 |
| CDX98140 | Canola | cytosol | 67.42 | 65.88 |
| CDY36422 | Canola | cytosol | 67.35 | 65.77 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 37.67 | 65.0 |
| KRH73064 | Soybean | cytosol | 63.82 | 61.35 |
| KRH15072 | Soybean | cytosol | 63.53 | 60.83 |
| TraesCS5B01G363900.1 | Wheat | cytosol, plasma membrane | 60.14 | 60.18 |
| KRG97865 | Soybean | cytosol | 61.63 | 59.2 |
| KRH31014 | Soybean | nucleus | 61.48 | 59.06 |
| TraesCS3B01G114200.1 | Wheat | plastid | 58.09 | 58.46 |
| TraesCS3B01G274600.1 | Wheat | cytosol | 39.93 | 40.71 |
| CDY69502 | Canola | cytosol | 7.35 | 39.25 |
| TraesCS6B01G195700.1 | Wheat | plastid | 21.34 | 17.95 |
| TraesCS4B01G224700.1 | Wheat | plastid | 21.91 | 17.34 |
| TraesCS7B01G299100.1 | Wheat | cytosol | 20.35 | 17.02 |
| TraesCS2B01G230000.1 | Wheat | cytosol, golgi | 19.36 | 16.51 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005086 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0032012 | InterPro:IPR000904 | InterPro:IPR023394 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 |
| PANTHER:PTHR44190 | PANTHER:PTHR44190:SF3 | SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf |
| InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | EnsemblPlantsGene:TraesCS4B01G018700 | EnsemblPlants:TraesCS4B01G018700.1 | TIGR:cd00171 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:13416143..13421501
Molecular Weight (calculated)
156311.0 Da
IEP (calculated)
6.102
GRAVY (calculated)
-0.056
Length
1415 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRPRPLTSG GIDPIAEESS PSRSPPHHPA PCADPAALAC AISAQASAVL AVMRRGLRHP RADDAAADHP LVASLKALRR LAFAAASPQH SPSLPAAALR
0101: PFLDAVRSED AGADATSAAL AALHEVMALT APALPGSALR EVVDAVACCR FEAGADPAAE EDVLVRMLQA LLACLRAPAA PALGDQHVLT AVNTCFRVVH
0201: QAAAKGDLLQ RFSRHVMHEL VRLVFARLPQ IGAGGDADDA AVKPEMGGMD KNHPFGIGQM ENGNGSYVSE AGTPDENSPD GSVLVVEPYG TPCMEEIFHF
0301: LCSLLSGVEL NGYDEGQPLF ALKLINSAIE LGGSAIGRHP KVLSLVQDEL FRNLMQLGLS ISPLTLSVVC SIVLNLYHHL RNELKMQLEA FFCCIILRLA
0401: QPRFGATYHQ QEVAMEALVD FCRQKNFMVE MYANLDCDIT CRNVFEELAN LLSKSAFPIN CPLSSMHILA LEGLIAVIQG MADRIGNATS GPELRSVELD
0501: EYAPFWTVKC ENFLDPQHWV KFVRQRKYVK RRLMIGADHF NRDPKKGLEF LQGNHLLPEK LDPQSVACFF RYTAGLDKNL VGDFLGNHDE FCVQVLHEFA
0601: QTFDFEEMNL DTALRLFLET FRLPGESQKI QRVLEAFSDR YYEQAPQAFA NKDTALLLSY SIIMLNTDQH NMQVKKKMTE EDFIKNNRSI NGGSDLPREM
0701: LSELYHAICR NEIKTTPEQG MGYLEMSPSR WIDLMRKSKS TPQYIVGDSQ PFLDHDMFAI MSGPTIAAIA VVFDHSEHEE VLLTCVDGFL GIAKISAFHH
0801: LEDVLDDLVV SLCKFTTLLN TSLVEEPVTA FGDDLKARLA TETLFTIANK YGHYIRTGWR NVLDCILRLH KLGLLPARVA SDAADDSEVS AETVQGKPVP
0901: SSISTSHVPV MGTPRKSSGL MGRFSQLLSL DSEEPRSQPT EQQLAAHQRT LQTIQKCRID GIFTESKVLQ PDSLLQLARA LIWAAGRPQK VASSPDDEDT
1001: AVFCLELLIA ITLNNRDRIV LLWQGVYEHI ANIVQSTVMP CALVEKAIFG LLRICQRLLP YKENLADELL RSLQLVLKLD ARVADAYCEN ITQEVARLVK
1101: ANAGHIKSQM GWRTVVLLLS ITARHPDASG VGFEAIMFIM SEGHLSRSNY AFCIEASRQF AESRVGLTDR SIRALDLMAD SVTNLARWSQ DTKEAGEEAD
1201: RGVEAIREMW LKLLQALKKL SLDQREEVRN HALVSLQRCL TATEGIGLQS ATWSHAFDHI IFALLDDLLE IAQNHSQKDH RNMEGSLVLA VRLVAKVYLE
1301: LLPDLFGLSS FCKLWLGVLS RMEKCIKAKV RGKRSDKLQE LIPDLLRNVL AAMKGRGILA KRSTIGGDSL WELTWLHVNN ISTGLQSEVF PSQEYEPPSN
1401: AGSPRGGLND AEIKN
0101: PFLDAVRSED AGADATSAAL AALHEVMALT APALPGSALR EVVDAVACCR FEAGADPAAE EDVLVRMLQA LLACLRAPAA PALGDQHVLT AVNTCFRVVH
0201: QAAAKGDLLQ RFSRHVMHEL VRLVFARLPQ IGAGGDADDA AVKPEMGGMD KNHPFGIGQM ENGNGSYVSE AGTPDENSPD GSVLVVEPYG TPCMEEIFHF
0301: LCSLLSGVEL NGYDEGQPLF ALKLINSAIE LGGSAIGRHP KVLSLVQDEL FRNLMQLGLS ISPLTLSVVC SIVLNLYHHL RNELKMQLEA FFCCIILRLA
0401: QPRFGATYHQ QEVAMEALVD FCRQKNFMVE MYANLDCDIT CRNVFEELAN LLSKSAFPIN CPLSSMHILA LEGLIAVIQG MADRIGNATS GPELRSVELD
0501: EYAPFWTVKC ENFLDPQHWV KFVRQRKYVK RRLMIGADHF NRDPKKGLEF LQGNHLLPEK LDPQSVACFF RYTAGLDKNL VGDFLGNHDE FCVQVLHEFA
0601: QTFDFEEMNL DTALRLFLET FRLPGESQKI QRVLEAFSDR YYEQAPQAFA NKDTALLLSY SIIMLNTDQH NMQVKKKMTE EDFIKNNRSI NGGSDLPREM
0701: LSELYHAICR NEIKTTPEQG MGYLEMSPSR WIDLMRKSKS TPQYIVGDSQ PFLDHDMFAI MSGPTIAAIA VVFDHSEHEE VLLTCVDGFL GIAKISAFHH
0801: LEDVLDDLVV SLCKFTTLLN TSLVEEPVTA FGDDLKARLA TETLFTIANK YGHYIRTGWR NVLDCILRLH KLGLLPARVA SDAADDSEVS AETVQGKPVP
0901: SSISTSHVPV MGTPRKSSGL MGRFSQLLSL DSEEPRSQPT EQQLAAHQRT LQTIQKCRID GIFTESKVLQ PDSLLQLARA LIWAAGRPQK VASSPDDEDT
1001: AVFCLELLIA ITLNNRDRIV LLWQGVYEHI ANIVQSTVMP CALVEKAIFG LLRICQRLLP YKENLADELL RSLQLVLKLD ARVADAYCEN ITQEVARLVK
1101: ANAGHIKSQM GWRTVVLLLS ITARHPDASG VGFEAIMFIM SEGHLSRSNY AFCIEASRQF AESRVGLTDR SIRALDLMAD SVTNLARWSQ DTKEAGEEAD
1201: RGVEAIREMW LKLLQALKKL SLDQREEVRN HALVSLQRCL TATEGIGLQS ATWSHAFDHI IFALLDDLLE IAQNHSQKDH RNMEGSLVLA VRLVAKVYLE
1301: LLPDLFGLSS FCKLWLGVLS RMEKCIKAKV RGKRSDKLQE LIPDLLRNVL AAMKGRGILA KRSTIGGDSL WELTWLHVNN ISTGLQSEVF PSQEYEPPSN
1401: AGSPRGGLND AEIKN
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.