Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G361300.1 | Wheat | cytosol | 93.0 | 99.45 |
| TraesCS5B01G363900.1 | Wheat | cytosol, plasma membrane | 98.91 | 95.9 |
| HORVU5Hr1G088970.4 | Barley | plastid | 89.42 | 93.3 |
| Os02t0326600-01 | Rice | cytosol, plasma membrane | 65.5 | 90.16 |
| EER91946 | Sorghum | plastid | 87.97 | 84.57 |
| Zm00001d047092_P001 | Maize | mitochondrion, plastid | 86.94 | 83.83 |
| Zm00001d029910_P001 | Maize | plastid | 86.87 | 83.52 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 56.67 | 67.1 |
| KRH31013 | Soybean | cytosol | 55.8 | 60.62 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 64.19 | 59.86 |
| Solyc05g013040.2.1 | Tomato | cytosol | 63.24 | 59.83 |
| PGSC0003DMT400072858 | Potato | cytosol | 63.24 | 59.83 |
| TraesCS4D01G016900.1 | Wheat | cytosol | 61.56 | 59.69 |
| AT1G13980.1 | Thale cress | cytosol | 62.95 | 59.48 |
| Solyc04g005560.2.1 | Tomato | nucleus | 62.51 | 59.39 |
| CDX98140 | Canola | cytosol | 62.66 | 59.32 |
| Bra019694.1-P | Field mustard | cytosol | 62.58 | 59.25 |
| CDY36422 | Canola | cytosol | 62.51 | 59.14 |
| KRG97867 | Soybean | cytosol | 63.53 | 59.13 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 35.23 | 58.9 |
| KRH15072 | Soybean | cytosol | 60.98 | 56.56 |
| KRH73064 | Soybean | cytosol | 60.32 | 56.18 |
| KRG97865 | Soybean | cytosol | 59.74 | 55.6 |
| KRH31014 | Soybean | nucleus | 59.15 | 55.06 |
| TraesCS3D01G246200.1 | Wheat | cytosol | 39.68 | 39.16 |
| CDY69502 | Canola | cytosol | 7.08 | 36.6 |
| TraesCS6D01G157000.1 | Wheat | plastid | 21.37 | 17.42 |
| TraesCS7D01G392600.1 | Wheat | cytosol, plasma membrane, plastid | 20.79 | 16.87 |
| TraesCS4D01G225300.1 | Wheat | golgi, unclear | 21.81 | 16.72 |
| TraesCS2D01G212800.2 | Wheat | golgi | 20.64 | 16.5 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | InterPro:ARM-type_fold | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005086 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0032012 | InterPro:IPR000904 | InterPro:IPR023394 | PFAM:PF01369 | PFAM:PF12783 |
| PFscan:PS50190 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF3 | SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 |
| InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | EnsemblPlantsGene:TraesCS5D01G370200 | EnsemblPlants:TraesCS5D01G370200.1 |
| TIGR:cd00171 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:445198950..445203661
Molecular Weight (calculated)
153028.0 Da
IEP (calculated)
5.118
GRAVY (calculated)
-0.057
Length
1371 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRYGGDDGGG AEEEHLDHPL IAGLKSLRRR AAAWGTRWPE ADPLLCLRPF LDVVRSDETG APITGSALSS LHKLLSLDLV APGGGAAEAM GAVVEAVTGC
0101: RFEVTDPASE EAVLARVLQV LLACVRGRAA PALSNRHVCA IVTTCFRVVQ QAGTKGELLQ RVSRQTMQEV IRCVFARLAD IEPTAIVNEQ ISKNQDLGAE
0201: ELGNGKSDYV CLNSSGDEVG GGFGAVQDKD MMEPLGVPCM VEILQFLCSL LNIAEDMDVS QRMNGIDYDE DVPLFALGLI NSAIELSASS IHRHPKLLAF
0301: VQDELFHNLM QFGLSMSPLI LSTVCSTVFT LFYHLRQELK LQIEAFFSCV ILRLAQGRYG ASYQQQEVAL EALVDFCRQK EFMAEMYANM DCDLQCSNVF
0401: EDLANLLSRS AFPVNSPLSA LNVLALDGLV AVIQAIAERS DHAHQHHGQT VPEISEYFPF WQLKCEGSND PDQWVRFVHQ QKSIKRKLMV GVEHFNRDKK
0501: KGFEYLQGVH LLPEKLDPRS VALFFRYTPG LDKNLLGEYL GNHDEFSILV LHEFAKTFDF EDMNLDAALR LFLETFRLPG ESQKIQRILE AFSERYYEQS
0601: PHMFVNRDAA LVLSYSVIML NTDQHNVRVK KKMTEEDFIR NNRRINGGND LPREFLSELF YSICRNEIKT IPEQGAGCSE MSYSRWVDLM WKSKRTSVYI
0701: ACDSYPFLDN DMFPIMAGPS VAAISVVFDN VEHEEILTGC IDGFLSVAKL AAFYHLDDVL NDLVVGLCKF TTLLNNSYAD DPVIAFGVDT KARMATEAVF
0801: TIATTYGDHI RSGWRNIVDC ILRLHKIGLL PGRLTGDTGD DQESSSDSLP SKLGSYAVAP QALPINTPKK TYGLMGRFSQ LLYLDAEEPR SQPTEEQLAA
0901: QRNALETVKK CQIGTIFTES KFLQADSLSN LARALIQAAG RPQRITSSLD DEGTAVFCLE LLITVTLNNR DRIVLLWQGV YEHITHIVQS TVMPCNLVEK
1001: AVFGLLHICQ RLLPYKENLV DDLLRSLQLI LKLDARVADA YCENITLEVT RLVKANATHI KSQMGWRTII SLLCVTARHP DASDAGFEAL VFIMSEGAHL
1101: SPANFIVSVE ASRQFAESRL GSAERSIHAL NLMADSVNCL TRWSREVKEA GGEADRILEG IAEMWLRLVQ ALRKVCTDQR EEVRNHALLC LHRCLIVDGI
1201: SVSSSAWLMS FDIIFQLLDE LLEIAQSYSP KDFRNMEVSL LHAVKLLCKV FLQSLKDLSA QSSFSKLWLE VLDMIEKFMK VKLRGRRTEK LHEAIPELLK
1301: NILLVMKANG VLSKTSASEE NTLWEATWLQ VNKVAPSLQP EVFPDNESDS AAEGEQSKPE SSAQEGQTAE Q
0101: RFEVTDPASE EAVLARVLQV LLACVRGRAA PALSNRHVCA IVTTCFRVVQ QAGTKGELLQ RVSRQTMQEV IRCVFARLAD IEPTAIVNEQ ISKNQDLGAE
0201: ELGNGKSDYV CLNSSGDEVG GGFGAVQDKD MMEPLGVPCM VEILQFLCSL LNIAEDMDVS QRMNGIDYDE DVPLFALGLI NSAIELSASS IHRHPKLLAF
0301: VQDELFHNLM QFGLSMSPLI LSTVCSTVFT LFYHLRQELK LQIEAFFSCV ILRLAQGRYG ASYQQQEVAL EALVDFCRQK EFMAEMYANM DCDLQCSNVF
0401: EDLANLLSRS AFPVNSPLSA LNVLALDGLV AVIQAIAERS DHAHQHHGQT VPEISEYFPF WQLKCEGSND PDQWVRFVHQ QKSIKRKLMV GVEHFNRDKK
0501: KGFEYLQGVH LLPEKLDPRS VALFFRYTPG LDKNLLGEYL GNHDEFSILV LHEFAKTFDF EDMNLDAALR LFLETFRLPG ESQKIQRILE AFSERYYEQS
0601: PHMFVNRDAA LVLSYSVIML NTDQHNVRVK KKMTEEDFIR NNRRINGGND LPREFLSELF YSICRNEIKT IPEQGAGCSE MSYSRWVDLM WKSKRTSVYI
0701: ACDSYPFLDN DMFPIMAGPS VAAISVVFDN VEHEEILTGC IDGFLSVAKL AAFYHLDDVL NDLVVGLCKF TTLLNNSYAD DPVIAFGVDT KARMATEAVF
0801: TIATTYGDHI RSGWRNIVDC ILRLHKIGLL PGRLTGDTGD DQESSSDSLP SKLGSYAVAP QALPINTPKK TYGLMGRFSQ LLYLDAEEPR SQPTEEQLAA
0901: QRNALETVKK CQIGTIFTES KFLQADSLSN LARALIQAAG RPQRITSSLD DEGTAVFCLE LLITVTLNNR DRIVLLWQGV YEHITHIVQS TVMPCNLVEK
1001: AVFGLLHICQ RLLPYKENLV DDLLRSLQLI LKLDARVADA YCENITLEVT RLVKANATHI KSQMGWRTII SLLCVTARHP DASDAGFEAL VFIMSEGAHL
1101: SPANFIVSVE ASRQFAESRL GSAERSIHAL NLMADSVNCL TRWSREVKEA GGEADRILEG IAEMWLRLVQ ALRKVCTDQR EEVRNHALLC LHRCLIVDGI
1201: SVSSSAWLMS FDIIFQLLDE LLEIAQSYSP KDFRNMEVSL LHAVKLLCKV FLQSLKDLSA QSSFSKLWLE VLDMIEKFMK VKLRGRRTEK LHEAIPELLK
1301: NILLVMKANG VLSKTSASEE NTLWEATWLQ VNKVAPSLQP EVFPDNESDS AAEGEQSKPE SSAQEGQTAE Q
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.