Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G016900.1 | Wheat | cytosol | 98.09 | 98.23 |
| TraesCS4B01G018700.1 | Wheat | cytosol | 97.03 | 97.1 |
| Os03t0666100-00 | Rice | extracellular, golgi | 76.34 | 89.27 |
| KXG37878 | Sorghum | cytosol | 87.85 | 88.16 |
| Zm00001d013590_P001 | Maize | mitochondrion | 87.15 | 87.21 |
| HORVU4Hr1G002880.3 | Barley | cytosol | 84.6 | 84.25 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 59.46 | 72.71 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 69.92 | 67.35 |
| KRH31013 | Soybean | cytosol | 59.96 | 67.27 |
| Solyc04g005560.2.1 | Tomato | nucleus | 68.15 | 66.87 |
| PGSC0003DMT400072858 | Potato | cytosol | 68.22 | 66.67 |
| KRG97867 | Soybean | cytosol | 69.21 | 66.53 |
| AT1G13980.1 | Thale cress | cytosol | 68.08 | 66.44 |
| Solyc05g013040.2.1 | Tomato | cytosol | 67.66 | 66.11 |
| CDX98140 | Canola | cytosol | 67.51 | 66.02 |
| Bra019694.1-P | Field mustard | cytosol | 67.51 | 66.02 |
| CDY36422 | Canola | cytosol | 67.44 | 65.91 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 37.92 | 65.49 |
| TraesCS5A01G361300.1 | Wheat | cytosol | 57.06 | 63.03 |
| KRH73064 | Soybean | cytosol | 63.63 | 61.21 |
| KRH15072 | Soybean | cytosol | 63.35 | 60.69 |
| KRG97865 | Soybean | cytosol | 61.58 | 59.2 |
| TraesCS3A01G098600.1 | Wheat | cytosol, plastid | 57.91 | 59.12 |
| KRH31014 | Soybean | nucleus | 61.37 | 59.0 |
| TraesCS3A01G245300.1 | Wheat | cytosol | 39.9 | 40.76 |
| CDY69502 | Canola | cytosol | 7.49 | 40.0 |
| TraesCS6A01G168000.1 | Wheat | plastid | 21.12 | 17.78 |
| TraesCS7A01G398300.1 | Wheat | cytosol, plastid | 21.19 | 17.74 |
| TraesCS4A01G067400.1 | Wheat | plastid | 22.1 | 17.51 |
| TraesCS2A01G202900.1 | Wheat | cytosol | 18.79 | 16.78 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005086 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0032012 | InterPro:IPR000904 | InterPro:IPR023394 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 |
| PANTHER:PTHR44190 | PANTHER:PTHR44190:SF3 | SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 | InterPro:Sec7_C_sf |
| InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | EnsemblPlantsGene:TraesCS4A01G294900 | EnsemblPlants:TraesCS4A01G294900.1 | TIGR:cd00171 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:595984431..595989792
Molecular Weight (calculated)
156771.0 Da
IEP (calculated)
6.235
GRAVY (calculated)
-0.040
Length
1416 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGRPRPLNSG GIDPIAEESP PHHHAPPHAA PCADPAALAC AISAQASAVL AVMRRGLRHP RAAAADDAAA DHPLVASLKA LRRLAFAPLA AASPSLPAAA
0101: LRPFLDAVRS EDAGADATSA ALAALHEVMA LTAPALPGSA LREVVDAVAC CRFEAGAEPA AEEDVLMRML QALLACLRAP AAPALGNQHV LTAVNTCFRV
0201: VHQAAAKGDL LQRFSRHVMH ELVRLVFARL PLIGTGDADD AAVKPEMGGM DKNHPFGIGQ MENGNGSYVS EAGTPDENSP DGSVLVVEPY GTTCMEEIFH
0301: FLCSLLSGVE LNGYDEGQPL FALKLINSAI ELGGSAIGRH PKVLSLVQDE LFRNLMQLGL SISPLTLSVV CSIVLNLYHH LRNELKMQLE AFFCCIILRL
0401: AQPRFGATYH QQEVAMEALV DFCRQKNFMV EMYANLDCDI TCRNVFEELA NLLSKSAFPI NCPLSSMHIL ALEGLIAVIQ GMADRIGNAT SGPELRSVEL
0501: DEYAPFWTVK CENFLDPQHW VKFVRQRKYV KRRLMIGADH FNRDPKKGLE FLQGNHLLPE KLDPQSVACF FRYTAGLDKN LVGDFLGNHD EFCVQVLHEF
0601: AQTFDFEEMN LDTALRLFLE TFRLPGESQK IQRVLEAFSD RYYEQAPQAF ANKDTALLLS YSIIMLNTDQ HNMQVKKKMT EEDFIKNNRN INGGSDLPRE
0701: MLSELYHAIC RNEIKTTPEQ GMGYLEMSPS RWIDLMRKSK STPQYIVGDS QPFLDHDMFA IMSGPTIAAI AVVFDHSEHE EVLLTCVDGF LGIAKISAFH
0801: HLEDVLDDLV VSLCKFTTLL NTSLVEEPVT AFGDDLKARL ATETLFTIAN RYGHYIRTGW RNVLDCILRL HKLGLLPARV ASDAADDSEV CAETVQGKPV
0901: PSSISTSHIP VMGTPRKSSG LMGRFSQLLS LDSEEPRSQP TEQQLAAHQR TLQTIQKCRI DGIFTESKVL HPDSLLQLAR ALIWAAGRPQ KVASSPDDED
1001: TAVFCLELLI AITLNNRDRI VLLWQGVYEH IANIVQSTVM PCALVEKAIF GLLRICQRLL PYKENLADEL LRSLQLVLKL DARVADAYCE NITQEVARLV
1101: KANARHIKSQ MGWRTVVLLL SITARHPDAS GVGFEAIMFV MSEGHLSRSN YAFCIEASRQ FAESRVGLTD RSIRALDLMA DSVTNLARWS QDTKEPGEDA
1201: DRGLEAIREM WLKLLQALKK LSLDQREEVR NHALVSLQRC LTATEGIGLQ STTWSHAFDH VIFVLLDDLL EIAQNHSQKD HRNMEGSLVL AVKLVAKVYL
1301: QLLPDLFGLS SFCKLWLGVL SRMEKCIKTK VRGKRSDKLQ ELILDLLRNI LVAMKSRGIL AKRSTIGGDS LWELTWLHVN NISTGLQSEV FPSQEYEPPS
1401: NASSPRGGLN DVEIKN
0101: LRPFLDAVRS EDAGADATSA ALAALHEVMA LTAPALPGSA LREVVDAVAC CRFEAGAEPA AEEDVLMRML QALLACLRAP AAPALGNQHV LTAVNTCFRV
0201: VHQAAAKGDL LQRFSRHVMH ELVRLVFARL PLIGTGDADD AAVKPEMGGM DKNHPFGIGQ MENGNGSYVS EAGTPDENSP DGSVLVVEPY GTTCMEEIFH
0301: FLCSLLSGVE LNGYDEGQPL FALKLINSAI ELGGSAIGRH PKVLSLVQDE LFRNLMQLGL SISPLTLSVV CSIVLNLYHH LRNELKMQLE AFFCCIILRL
0401: AQPRFGATYH QQEVAMEALV DFCRQKNFMV EMYANLDCDI TCRNVFEELA NLLSKSAFPI NCPLSSMHIL ALEGLIAVIQ GMADRIGNAT SGPELRSVEL
0501: DEYAPFWTVK CENFLDPQHW VKFVRQRKYV KRRLMIGADH FNRDPKKGLE FLQGNHLLPE KLDPQSVACF FRYTAGLDKN LVGDFLGNHD EFCVQVLHEF
0601: AQTFDFEEMN LDTALRLFLE TFRLPGESQK IQRVLEAFSD RYYEQAPQAF ANKDTALLLS YSIIMLNTDQ HNMQVKKKMT EEDFIKNNRN INGGSDLPRE
0701: MLSELYHAIC RNEIKTTPEQ GMGYLEMSPS RWIDLMRKSK STPQYIVGDS QPFLDHDMFA IMSGPTIAAI AVVFDHSEHE EVLLTCVDGF LGIAKISAFH
0801: HLEDVLDDLV VSLCKFTTLL NTSLVEEPVT AFGDDLKARL ATETLFTIAN RYGHYIRTGW RNVLDCILRL HKLGLLPARV ASDAADDSEV CAETVQGKPV
0901: PSSISTSHIP VMGTPRKSSG LMGRFSQLLS LDSEEPRSQP TEQQLAAHQR TLQTIQKCRI DGIFTESKVL HPDSLLQLAR ALIWAAGRPQ KVASSPDDED
1001: TAVFCLELLI AITLNNRDRI VLLWQGVYEH IANIVQSTVM PCALVEKAIF GLLRICQRLL PYKENLADEL LRSLQLVLKL DARVADAYCE NITQEVARLV
1101: KANARHIKSQ MGWRTVVLLL SITARHPDAS GVGFEAIMFV MSEGHLSRSN YAFCIEASRQ FAESRVGLTD RSIRALDLMA DSVTNLARWS QDTKEPGEDA
1201: DRGLEAIREM WLKLLQALKK LSLDQREEVR NHALVSLQRC LTATEGIGLQ STTWSHAFDH VIFVLLDDLL EIAQNHSQKD HRNMEGSLVL AVKLVAKVYL
1301: QLLPDLFGLS SFCKLWLGVL SRMEKCIKTK VRGKRSDKLQ ELILDLLRNI LVAMKSRGIL AKRSTIGGDS LWELTWLHVN NISTGLQSEV FPSQEYEPPS
1401: NASSPRGGLN DVEIKN
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.