Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G098600.1 | Wheat | cytosol, plastid | 93.17 | 94.45 |
| HORVU3Hr1G017750.4 | Barley | cytosol | 65.86 | 93.72 |
| Os02t0326600-01 | Rice | cytosol, plasma membrane | 57.89 | 81.73 |
| TraesCS5B01G363900.1 | Wheat | cytosol, plasma membrane | 78.59 | 78.15 |
| GSMUA_Achr6P22810_001 | Banana | golgi | 51.35 | 62.35 |
| KRH31013 | Soybean | cytosol | 52.49 | 58.48 |
| TraesCS4B01G018700.1 | Wheat | cytosol | 58.46 | 58.09 |
| PGSC0003DMT400072858 | Potato | cytosol | 59.46 | 57.7 |
| GSMUA_Achr6P03140_001 | Banana | cytosol, nucleus, plastid | 33.64 | 57.68 |
| VIT_02s0012g01790.t01 | Wine grape | cytosol | 60.24 | 57.62 |
| Solyc05g013040.2.1 | Tomato | cytosol | 59.32 | 57.56 |
| Solyc04g005560.2.1 | Tomato | nucleus | 58.75 | 57.24 |
| KRG97867 | Soybean | cytosol | 59.82 | 57.09 |
| AT1G13980.1 | Thale cress | cytosol | 58.61 | 56.79 |
| CDX98140 | Canola | cytosol | 58.25 | 56.56 |
| Bra019694.1-P | Field mustard | cytosol | 58.18 | 56.49 |
| CDY36422 | Canola | cytosol | 58.11 | 56.38 |
| KRH15072 | Soybean | cytosol | 58.25 | 55.41 |
| KRH73064 | Soybean | cytosol | 57.68 | 55.1 |
| KRG97865 | Soybean | cytosol | 57.11 | 54.51 |
| KRH31014 | Soybean | nucleus | 56.26 | 53.7 |
| CDY69502 | Canola | cytosol | 8.39 | 44.53 |
| TraesCS3B01G274600.1 | Wheat | cytosol | 37.7 | 38.18 |
| TraesCS6B01G195700.1 | Wheat | plastid | 20.55 | 17.18 |
| TraesCS7B01G299100.1 | Wheat | cytosol | 20.06 | 16.67 |
| TraesCS4B01G224700.1 | Wheat | plastid | 20.91 | 16.44 |
| TraesCS2B01G230000.1 | Wheat | cytosol, golgi | 18.71 | 15.84 |
Protein Annotations
| Gene3D:1.10.1000.11 | Gene3D:1.10.220.20 | MapMan:22.3.3.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0005086 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0032012 | InterPro:IPR000904 | InterPro:IPR023394 | PFAM:PF01369 | PFAM:PF12783 | PFscan:PS50190 |
| PFscan:PS51257 | PANTHER:PTHR44190 | PANTHER:PTHR44190:SF3 | SMART:SM00222 | SUPFAM:SSF48371 | SUPFAM:SSF48425 |
| InterPro:Sec7_C_sf | InterPro:Sec7_N | InterPro:Sec7_dom | InterPro:Sec7_dom_sf | EnsemblPlantsGene:TraesCS3B01G114200 | EnsemblPlants:TraesCS3B01G114200.1 |
| TIGR:cd00171 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:80164365..80168996
Molecular Weight (calculated)
156146.0 Da
IEP (calculated)
5.170
GRAVY (calculated)
0.025
Length
1406 amino acids
Sequence
(BLAST)
(BLAST)
0001: MRAPPPPQSP SPSASHAAMA CVVTSEVAAV LAIMRRNVRW AAGGDDDPLD HPLVAGLKSL RRAAAAWGTR RWRDVEPLLY LGPFLDVVRS DEAGAPATGA
0101: ALSSLHKMLS LDLVGPDAPN AVEAMSAVVE AVAGCRFEVT DAASEEAVLA RALQVLLACV RGRAAPALSN RHVCDIVNTC FRVVQQAGAK GELLQRVSRQ
0201: TMQEVVRCVF ARLPDIDPTA VADHKIAGSK NEASSASEMG NGSDSVCLSS SQDEVGCEFG VVQDKAMMEL FGVPCMVEIL QFLCSLLNIA EDSQVDPNMN
0301: PIDFDEDIPL FALGLINSAI ELSASSIQRH PKLLAFVQDE LFCNLMQFGL SDSPLILSTV CSVIFTLFYH LRRELKLQIE AFFACVILRL TQSRYGASYQ
0401: QQEVALETLV DFCQQKDFMV EMYTNMDCDL QCSNVLEDLV NVLSKSAFPE ESTLSTLNLL ALDGLLAVIQ AIAERIGNLP QHCQQPVQEL SEYFSFWQLK
0501: CENIDDPDQW VRFVNQQKSI KRKLMVGVEH FNSDKRKGFE YLQAAHLLPE KLDPQSVALF FRYSPGLDKN LLGDYLGNHD EFSIQVLHEF SRTFDFKELN
0601: LDAALRLFLE TFRLPGESQK IQRILEAFSD RYYEESPDLF VNRDAALVLS YSVILLNTDQ HNVRVKNKMS EEDFIRNNRR INGGNDLPRG FLSELYYSIC
0701: RNEIKTIPEQ GVGCSEMSFS RWADLMFKSK RASAYIACHS YPFLDHDMFL IMARPTVAAI SVIFDNVEQE EILTRCIDGF LSVAKLAAFY HLNDVLNDLV
0801: VALGKFTILS IAFDDPATAF GEDAKARMAT EALFTIAATH GDHINRGWRT IVDCILRFHK IGLLPSCLTN GTAGDQESFS ASLPSKVSSS SPAAPQVEPI
0901: RIPKKTYGLM GRFTQLLYLD AEEQRFQPTE EQLAAQRNAS ETIKKCQIGT IFTESKFLQA DSLLNLARAL IQAAGRPQKI TSSIDVESNA VICLELIVAV
1001: TLNNRDRIVL LWRDVYEHIT HIVQSTVMPC NLVEKAVFGL LDICQRLLPY KENLVDDLLR SLQLILKLDA RVADAYCESI TQKVACLVKD NATHIKSQMG
1101: WQTIISLLCV TAHHPDASDA GFEALVYIMF EGAHLSPANF VLSVEASRQF AQSRLGSAER SIHALNLMAE SVNCLARWSH EVKEAGGEAE RMLEGITEMW
1201: LRLAQALRKV CTDQREQVRD HALVLLHRCL VVDGISVPSS AWLMSFDIVF QLLDELLEIA QNFSPRDYRS MEASLLHAVT LLSKLSLQSL NDLSAHSGFS
1301: KLWVEVLDMV EKLMKVKVRG SSRTEKLQEA ATELLKNILL AMKASGILSR TRAGGESSLW EATWLQVNKI APSLQSVVFP GYDDAVQGSQ SKLDIPAVSE
1401: GRLVPV
0101: ALSSLHKMLS LDLVGPDAPN AVEAMSAVVE AVAGCRFEVT DAASEEAVLA RALQVLLACV RGRAAPALSN RHVCDIVNTC FRVVQQAGAK GELLQRVSRQ
0201: TMQEVVRCVF ARLPDIDPTA VADHKIAGSK NEASSASEMG NGSDSVCLSS SQDEVGCEFG VVQDKAMMEL FGVPCMVEIL QFLCSLLNIA EDSQVDPNMN
0301: PIDFDEDIPL FALGLINSAI ELSASSIQRH PKLLAFVQDE LFCNLMQFGL SDSPLILSTV CSVIFTLFYH LRRELKLQIE AFFACVILRL TQSRYGASYQ
0401: QQEVALETLV DFCQQKDFMV EMYTNMDCDL QCSNVLEDLV NVLSKSAFPE ESTLSTLNLL ALDGLLAVIQ AIAERIGNLP QHCQQPVQEL SEYFSFWQLK
0501: CENIDDPDQW VRFVNQQKSI KRKLMVGVEH FNSDKRKGFE YLQAAHLLPE KLDPQSVALF FRYSPGLDKN LLGDYLGNHD EFSIQVLHEF SRTFDFKELN
0601: LDAALRLFLE TFRLPGESQK IQRILEAFSD RYYEESPDLF VNRDAALVLS YSVILLNTDQ HNVRVKNKMS EEDFIRNNRR INGGNDLPRG FLSELYYSIC
0701: RNEIKTIPEQ GVGCSEMSFS RWADLMFKSK RASAYIACHS YPFLDHDMFL IMARPTVAAI SVIFDNVEQE EILTRCIDGF LSVAKLAAFY HLNDVLNDLV
0801: VALGKFTILS IAFDDPATAF GEDAKARMAT EALFTIAATH GDHINRGWRT IVDCILRFHK IGLLPSCLTN GTAGDQESFS ASLPSKVSSS SPAAPQVEPI
0901: RIPKKTYGLM GRFTQLLYLD AEEQRFQPTE EQLAAQRNAS ETIKKCQIGT IFTESKFLQA DSLLNLARAL IQAAGRPQKI TSSIDVESNA VICLELIVAV
1001: TLNNRDRIVL LWRDVYEHIT HIVQSTVMPC NLVEKAVFGL LDICQRLLPY KENLVDDLLR SLQLILKLDA RVADAYCESI TQKVACLVKD NATHIKSQMG
1101: WQTIISLLCV TAHHPDASDA GFEALVYIMF EGAHLSPANF VLSVEASRQF AQSRLGSAER SIHALNLMAE SVNCLARWSH EVKEAGGEAE RMLEGITEMW
1201: LRLAQALRKV CTDQREQVRD HALVLLHRCL VVDGISVPSS AWLMSFDIVF QLLDELLEIA QNFSPRDYRS MEASLLHAVT LLSKLSLQSL NDLSAHSGFS
1301: KLWVEVLDMV EKLMKVKVRG SSRTEKLQEA ATELLKNILL AMKASGILSR TRAGGESSLW EATWLQVNKI APSLQSVVFP GYDDAVQGSQ SKLDIPAVSE
1401: GRLVPV
0001: MGRLKLHSGI KAIEEEPEDF ECTDSSNTTT LACMIDTEIA AVLAVMRRNV RWGGRYMSGD DQLEHSLIQS LKALRKQVFS WNQPWHTISP MLYLQPFLDV
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
0101: IRSDETGAPI TSIALSSVYK ILNLNVIDQN TANIEDAMHL VVDSVTSCRF EVTDPASEEV VLMKILQVLL ACMKNKASVM LSNQHVCTVV NTCFRVVHQA
0201: GMKGELLQRV ARHTMHELVR CIFSHLPDVE RTETTLVNRA GSIKQEKAGV DSDYAIVSKP VEDGNANSEY DVENSMATFA TGAQSLMDDG PVGPGSRKPA
0301: SPYDLHIMTE PYGVPSMVEI FHFLCSLLNV VEHVGMGSRS NTIAFDEDVP LFALNLINSA IELGGSSIRH HPRLLSLIQD ELFRNLMQFG LSMSPLILSM
0401: VCSIVLNLYQ HLRTELKLQL EAFFSCVILR LAQGKYGPSY QQQEVAMEAL VNFCRQKSFM VEMYANLDCD ITCSNVFEEL SNLLSKSTFP VNCPLSAMHI
0501: LALDGLIAVI QGMAERISNG LTGLDLGPVH LDEYTPFWMV KCDNYSDPNH WVSFVRRRKY IKRRLMIGAD HFNRDPKKGL EFLQGTHLLP DKLDPQSVAC
0601: FFRYTAGLDK NLVGDFLGNH DEFCVQVLNE FAGTFDFQYM NLDTALRLFL ETFRLPGESQ KIQRVLEAFS ERYYMQSPEI LANKDAALVL SYSIIMLNTD
0701: QHNVQVKKKM TEEDFIRNNR HINGGNDLPR EFLSELFHSI CNNEIRTTPE QGAGFPEMTP SRWIDLMHKS KKTAPYILAD SRAYLDHDMF AIMSGPTIAA
0801: ISVVFDHAEH EDVYQTCIDG FLAIAKISAC HHLEDVLDDL VVSLCKFTTL LNPSSVDEPV LAFGDDAKAR MATITIFTIA NKYGDYIRTG WRNILDCILR
0901: LHKLGLLPAR VASDAADESE HSSEQGQGKP LANSLSSAHL QSMGTPRRSS GLMGRFSQLL SLDTEEPRSQ PTEQQLAAHQ RTLQTIQKCH IDSIFTESKF
1001: LQAESLLQLA RALIWAAGRP QKGTSSPEDE DTAVFCLELL IAITLNNRDR IVLLWQGVYE HIATIAQSTV MPCNLVDKAI FGLLRICQRL LPYKESLADE
1101: LLRSLQLVLK LDARVADAYC EQIAIEVSRL VKANANHIRS QAGWRTITSL LSITARHPEA SESGFDAVSF VMSEGTHLYP ANYVLCVDAA RQFAESRVGQ
1201: SERSIRALDL MGDSLEFLAK WALSAKENMG EEDFGKMSQD IGEMWLRLVQ GLRKVCLDQR EDVRNHALQS LQKCLGGVDG INLAHSMWSQ CFDKVIFTVL
1301: DDLLEIAAGS QKDYRNMEGT LLLAIKLLSK VFLQQLQELS QLSTFCKLWL GVLTRMEKYM KVKVRGKKSD KLQESVPELL KNILLVMKTK GVLLQRSALG
1401: GDSLWELTWL HVNNIAPSMR LELFPDQESS QLGDDETVSN GLSSPENTTG S
Arabidopsis Description
GNARF guanine-nucleotide exchange factor GNOM [Source:UniProtKB/Swiss-Prot;Acc:Q42510]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.